Difference between revisions of "TSS:Mm 100455.1"
From referenceTSS
| Line 2: | Line 2: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=104828 | |distance_to_tss=104828 | ||
|end=119729548 | |end=119729548 | ||
| Line 9: | Line 9: | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
|gene_alias=A430071A18Rik | |gene_alias=A430071A18Rik | ||
| − | |gene_description= | + | |gene_description=regulatory associated protein of MTOR, complex 1, opposite strand |
|gene_name=Rptoros | |gene_name=Rptoros | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| Line 21: | Line 21: | ||
|start_of_center_position=119729537 | |start_of_center_position=119729537 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=12(GGCCTTTAAGAG,-,0.00),13(GCCTTTAAGAGA,-,0.00),14(CCTTTAAGAGAA,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:17, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 119729537 |
|---|---|
| End of the center position in the TSS region: | 119729538 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 104828 |
|---|---|
| Nearest PromoterID: | NR_045313 |
| Entrez ID: | 319454 |
| Nearest Unigene: | Mm.442144 |
| Nearest Refseq: | NR_045312 |
| Nearest Ensembl: | ENSMUSG00000085081 |
| Gene Name: | Rptoros |
| Gene Alias: | A430071A18Rik |
| Gene Description: | regulatory associated protein of MTOR, complex 1, opposite strand |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 12(GGCCTTTAAGAG,-,0.00),13(GCCTTTAAGAGA,-,0.00),14(CCTTTAAGAGAA,+,0.00) |
