Difference between revisions of "TSS:Mm 100607.1"
From referenceTSS
| Line 6: | Line 6: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=27996 | |distance_to_tss=27996 | ||
|end=121287995 | |end=121287995 | ||
| Line 12: | Line 12: | ||
|entrez_id=68837 | |entrez_id=68837 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=1110054H05Rik | + | |gene_alias=1110054H05Rik{{!}}5730434B08Rik{{!}}6230415M23Rik{{!}}ILF{{!}}Ilf1 |
|gene_description=forkhead box K2 | |gene_description=forkhead box K2 | ||
|gene_name=Foxk2 | |gene_name=Foxk2 | ||
| Line 25: | Line 25: | ||
|start_of_center_position=121287982 | |start_of_center_position=121287982 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-83(TTCCTTTAAAGG,-,0.00),-82(TCCTTTAAAGGG,+,0.00),-82(TCCTTTAAAGGG,-,0.00),-81(CCTTTAAAGGGC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:21, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 121287982 |
|---|---|
| End of the center position in the TSS region: | 121287983 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 27996 |
|---|---|
| Nearest PromoterID: | NM_001080932 |
| Entrez ID: | 68837 |
| Nearest Unigene: | Mm.209750 |
| Nearest Refseq: | NM_001080932 |
| Nearest Ensembl: | ENSMUSG00000039275 |
| Gene Name: | Foxk2 |
| Gene Alias: | 1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1 |
| Gene Description: | forkhead box K2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -83(TTCCTTTAAAGG,-,0.00),-82(TCCTTTAAAGGG,+,0.00),-82(TCCTTTAAAGGG,-,0.00),-81(CCTTTAAAGGGC,+,0.00) |
