Difference between revisions of "TSS:Mm 100827.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF225936:-165 MA461513:-165 LF225937:-397 MA461514:-397 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-165 |
|distance_to_tss=-9177 | |distance_to_tss=-9177 | ||
|end=5390920 | |end=5390920 | ||
| Line 16: | Line 17: | ||
|nearest_refseq=NM_001080924 | |nearest_refseq=NM_001080924 | ||
|nearest_unigene=Mm.216313 | |nearest_unigene=Mm.216313 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=5390914 | |start=5390914 | ||
|start_of_center_position=5390917 | |start_of_center_position=5390917 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-74(CTTTATATACTG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF225936 MA461513 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100827.1 | |tss_id=mm_100827.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:26, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5390917 |
|---|---|
| End of the center position in the TSS region: | 5390918 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF225936 MA461513 |
|---|---|
| Distance: | -165 |
| Num_trans: | 4 |
| All_trans: | LF225936:-165 MA461513:-165 LF225937:-397 MA461514:-397 |
TATA-Box annotation
| Distance to TSS: | -9177 |
|---|---|
| Nearest PromoterID: | NM_001290501 |
| Entrez ID: | 407821 |
| Nearest Unigene: | Mm.216313 |
| Nearest Refseq: | NM_001080924 |
| Nearest Ensembl: | ENSMUSG00000041961 |
| Gene Name: | Znrf3 |
| Gene Alias: | Gm1167 |
| Gene Description: | zinc and ring finger 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -74(CTTTATATACTG,+,0.00) |
