Difference between revisions of "TSS:Mm 100887.1"
From referenceTSS
| Line 2: | Line 2: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=36515 | |distance_to_tss=36515 | ||
|end=6029249 | |end=6029249 | ||
| Line 9: | Line 9: | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
|gene_alias=CaMKII | |gene_alias=CaMKII | ||
| − | |gene_description= | + | |gene_description=calcium/calmodulin-dependent protein kinase II, beta |
|gene_name=Camk2b | |gene_name=Camk2b | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000057897 | |nearest_ensembl=ENSMUSG00000057897 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_007595 |
|nearest_refseq=NM_007595 | |nearest_refseq=NM_007595 | ||
|nearest_unigene=Mm.439733 | |nearest_unigene=Mm.439733 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=6029232 | |start_of_center_position=6029232 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=39(CCCTCTTAAAGC,-,0.00),40(CCTCTTAAAGCT,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:27, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6029232 |
|---|---|
| End of the center position in the TSS region: | 6029233 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 36515 |
|---|---|
| Nearest PromoterID: | NM_007595 |
| Entrez ID: | 12323 |
| Nearest Unigene: | Mm.439733 |
| Nearest Refseq: | NM_007595 |
| Nearest Ensembl: | ENSMUSG00000057897 |
| Gene Name: | Camk2b |
| Gene Alias: | CaMKII |
| Gene Description: | calcium/calmodulin-dependent protein kinase II, beta |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 39(CCCTCTTAAAGC,-,0.00),40(CCTCTTAAAGCT,+,0.00) |
