Difference between revisions of "TSS:Mm 100988.1"
From referenceTSS
| Line 2: | Line 2: | ||
|IGFBP-3= | |IGFBP-3= | ||
|IGgfbp3= | |IGgfbp3= | ||
| − | |all_trans=ENSMUST00000135887.2:21 NM_008343:21 | + | |all_trans=LF198377:20 MA433954:20 ENSMUST00000135887.2:21 NM_008343:21 LF204676:21 MA440253:21 BC058261:38 ENSMUST00000020702.10:47 BC031421:47 X81581:113 AK141690:399 LF203001:-432 MA438578:-432 AK077477:480 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=20 |
|distance_to_tss=-44 | |distance_to_tss=-44 | ||
|end=7213990 | |end=7213990 | ||
| Line 11: | Line 11: | ||
|entrez_id=16009 | |entrez_id=16009 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=AI649005 | + | |gene_alias=AI649005{{!}}IGFBP-3{{!}}IGgfbp3 |
|gene_description=insulin-like growth factor binding protein 3 | |gene_description=insulin-like growth factor binding protein 3 | ||
|gene_id=16009 | |gene_id=16009 | ||
| − | |gene_name= | + | |gene_name=Igfbp3 |
|gene_source=MGI:96438 | |gene_source=MGI:96438 | ||
|gene_symbol=Igfbp3 | |gene_symbol=Igfbp3 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_008343 | |nearest_refseq=NM_008343 | ||
|nearest_unigene=Mm.29254 | |nearest_unigene=Mm.29254 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=7213943 | |start=7213943 | ||
|start_of_center_position=7213966 | |start_of_center_position=7213966 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF198377 MA433954 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100988.1 | |tss_id=mm_100988.1 | ||
Latest revision as of 16:30, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7213966 |
|---|---|
| End of the center position in the TSS region: | 7213967 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198377 MA433954 |
|---|---|
| Distance: | 20 |
| Num_trans: | 14 |
| All_trans: | LF198377:20 MA433954:20 ENSMUST00000135887.2:21 NM_008343:21 LF204676:21 MA440253:21 BC058261:38 ENSMUST00000020702.10:47 BC031421:47 X81581:113 AK141690:399 LF203001:-432 MA438578:-432 AK077477:480 |
TATA-Box annotation
| Distance to TSS: | -44 |
|---|---|
| Nearest PromoterID: | NM_008343 |
| Entrez ID: | 16009 |
| Nearest Unigene: | Mm.29254 |
| Nearest Refseq: | NM_008343 |
| Nearest Ensembl: | ENSMUSG00000020427 |
| Gene Name: | Igfbp3 |
| Gene Alias: | AI649005|IGFBP-3|IGgfbp3 |
| Gene Description: | insulin-like growth factor binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
