Difference between revisions of "TSS:Mm 101186.1"
From referenceTSS
| Line 4: | Line 4: | ||
|AI854501= | |AI854501= | ||
|C2orf32= | |C2orf32= | ||
| − | |all_trans=ENSMUST00000121971.1:49 | + | |all_trans=LF198389:-10 MA433966:-10 ENSMUST00000121971.1:49 LF226368:219 MA461945:219 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-10 |
| − | |distance_to_tss= | + | |distance_to_tss=43839 |
|end=17095703 | |end=17095703 | ||
|end_of_center_position=17095698 | |end_of_center_position=17095698 | ||
|entrez_id=380686 | |entrez_id=380686 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=1500041B16Rik | + | |gene_alias=1500041B16Rik{{!}}3110054C06Rik{{!}}5330437A18Rik{{!}}AI854501{{!}}C2orf32 |
|gene_description=cannabinoid receptor interacting protein 1 | |gene_description=cannabinoid receptor interacting protein 1 | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=Cnrip1 |
|gene_source=MGI:3651371 | |gene_source=MGI:3651371 | ||
|gene_symbol=Gm12013 | |gene_symbol=Gm12013 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_029861 | |nearest_refseq=NM_029861 | ||
|nearest_unigene=Mm.425666 | |nearest_unigene=Mm.425666 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=17095692 | |start=17095692 | ||
|start_of_center_position=17095697 | |start_of_center_position=17095697 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-47(GACTTTAAGAAG,-,0.00),-24(CTCCTTTAAAGA,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF198389 MA433966 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101186.1 | |tss_id=mm_101186.1 | ||
Latest revision as of 16:34, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17095697 |
|---|---|
| End of the center position in the TSS region: | 17095698 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198389 MA433966 |
|---|---|
| Distance: | -10 |
| Num_trans: | 5 |
| All_trans: | LF198389:-10 MA433966:-10 ENSMUST00000121971.1:49 LF226368:219 MA461945:219 |
TATA-Box annotation
| Distance to TSS: | 43839 |
|---|---|
| Nearest PromoterID: | NM_029861 |
| Entrez ID: | 380686 |
| Nearest Unigene: | Mm.425666 |
| Nearest Refseq: | NM_029861 |
| Nearest Ensembl: | ENSMUSG00000044629 |
| Gene Name: | Cnrip1 |
| Gene Alias: | 1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32 |
| Gene Description: | cannabinoid receptor interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -47(GACTTTAAGAAG,-,0.00),-24(CTCCTTTAAAGA,-,0.00) |
