Difference between revisions of "TSS:Mm 101197.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Evi8= | |Evi8= | ||
| + | |all_trans=LF198391:-32 MA433968:-32 LF226372:68 MA461949:68 LF226371:448 MA461948:448 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=-32 |
|distance_to_tss=3848 | |distance_to_tss=3848 | ||
|end=19015123 | |end=19015123 | ||
| Line 9: | Line 10: | ||
|entrez_id=17268 | |entrez_id=17268 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
| − | |gene_alias=C530044H18Rik | + | |gene_alias=C530044H18Rik{{!}}Evi8 |
|gene_description=Meis homeobox 1 | |gene_description=Meis homeobox 1 | ||
|gene_name=Meis1 | |gene_name=Meis1 | ||
| Line 17: | Line 18: | ||
|nearest_refseq=NM_010789 | |nearest_refseq=NM_010789 | ||
|nearest_unigene=Mm.356578 | |nearest_unigene=Mm.356578 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=19015119 | |start=19015119 | ||
|start_of_center_position=19015121 | |start_of_center_position=19015121 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(GAGCATTAAAAG,-,0.00),-33(GCATTAAAAGTC,+,0.00),27(CCTTTTAGATGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF198391 MA433968 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101197.1 | |tss_id=mm_101197.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:34, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19015121 |
|---|---|
| End of the center position in the TSS region: | 19015122 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198391 MA433968 |
|---|---|
| Distance: | -32 |
| Num_trans: | 6 |
| All_trans: | LF198391:-32 MA433968:-32 LF226372:68 MA461949:68 LF226371:448 MA461948:448 |
TATA-Box annotation
| Distance to TSS: | 3848 |
|---|---|
| Nearest PromoterID: | NM_001193271 |
| Entrez ID: | 17268 |
| Nearest Unigene: | Mm.356578 |
| Nearest Refseq: | NM_010789 |
| Nearest Ensembl: | ENSMUSG00000020160 |
| Gene Name: | Meis1 |
| Gene Alias: | C530044H18Rik|Evi8 |
| Gene Description: | Meis homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GAGCATTAAAAG,-,0.00),-33(GCATTAAAAGTC,+,0.00),27(CCTTTTAGATGC,+,0.00) |
