Difference between revisions of "TSS:Mm 101209.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Arp2= | |Arp2= | ||
|D6Ertd746e= | |D6Ertd746e= | ||
| − | |all_trans=AK014859:46 AK014618:240 | + | |all_trans=LF226380:-16 MA461957:-16 AK014859:46 LF226381:-177 MA461958:-177 AK014618:240 LF226382:-299 MA461959:-299 LF226377:437 MA461954:437 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-16 |
|distance_to_tss=49264 | |distance_to_tss=49264 | ||
|end=20063699 | |end=20063699 | ||
| Line 12: | Line 12: | ||
|entrez_id=66713 | |entrez_id=66713 | ||
|gc_percent=0.368159 | |gc_percent=0.368159 | ||
| − | |gene_alias=4921510D23Rik | + | |gene_alias=4921510D23Rik{{!}}AA409782{{!}}Arp2{{!}}D6Ertd746e |
|gene_description=ARP2 actin-related protein 2 | |gene_description=ARP2 actin-related protein 2 | ||
|gene_id=66713 | |gene_id=66713 | ||
| − | |gene_name= | + | |gene_name=Actr2 |
|gene_source=MGI:1913963 | |gene_source=MGI:1913963 | ||
|gene_symbol=Actr2 | |gene_symbol=Actr2 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1913963 | |hgnc_mgi_id=MGI:1913963 | ||
|nearest_ensembl=ENSMUSG00000020152 | |nearest_ensembl=ENSMUSG00000020152 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362899 |
|nearest_refseq=NM_146243 | |nearest_refseq=NM_146243 | ||
|nearest_unigene=Mm.259045 | |nearest_unigene=Mm.259045 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=20063674 | |start=20063674 | ||
|start_of_center_position=20063686 | |start_of_center_position=20063686 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF226380 MA461957 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101209.1 | |tss_id=mm_101209.1 | ||
Latest revision as of 16:35, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20063686 |
|---|---|
| End of the center position in the TSS region: | 20063687 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF226380 MA461957 |
|---|---|
| Distance: | -16 |
| Num_trans: | 10 |
| All_trans: | LF226380:-16 MA461957:-16 AK014859:46 LF226381:-177 MA461958:-177 AK014618:240 LF226382:-299 MA461959:-299 LF226377:437 MA461954:437 |
TATA-Box annotation
| Distance to TSS: | 49264 |
|---|---|
| Nearest PromoterID: | NM_001362899 |
| Entrez ID: | 66713 |
| Nearest Unigene: | Mm.259045 |
| Nearest Refseq: | NM_146243 |
| Nearest Ensembl: | ENSMUSG00000020152 |
| Gene Name: | Actr2 |
| Gene Alias: | 4921510D23Rik|AA409782|Arp2|D6Ertd746e |
| Gene Description: | ARP2 actin-related protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.368159 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
