Difference between revisions of "TSS:Mm 10128.1"
From referenceTSS
| Line 3: | Line 3: | ||
|AA959793= | |AA959793= | ||
|AI132312= | |AI132312= | ||
| + | |all_trans=LF258773:-122 MA494350:-122 LF258772:-250 MA494349:-250 LF258771:-389 MA494348:-389 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-122 |
|distance_to_tss=66472 | |distance_to_tss=66472 | ||
|end=3779938 | |end=3779938 | ||
| Line 11: | Line 12: | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik{{!}}AA589595{{!}}AA959793{{!}}AI132312 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 107, member B |
|gene_name=Fam107b | |gene_name=Fam107b | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 19: | Line 20: | ||
|nearest_refseq=NM_025626 | |nearest_refseq=NM_025626 | ||
|nearest_unigene=Mm.277864 | |nearest_unigene=Mm.277864 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=3779922 | |start=3779922 | ||
|start_of_center_position=3779930 | |start_of_center_position=3779930 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF258773 MA494350 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_10128.1 | |tss_id=mm_10128.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:36, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3779930 |
|---|---|
| End of the center position in the TSS region: | 3779931 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF258773 MA494350 |
|---|---|
| Distance: | -122 |
| Num_trans: | 6 |
| All_trans: | LF258773:-122 MA494350:-122 LF258772:-250 MA494349:-250 LF258771:-389 MA494348:-389 |
TATA-Box annotation
| Distance to TSS: | 66472 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | Fam107b |
| Gene Alias: | 3110001A13Rik|AA589595|AA959793|AI132312 |
| Gene Description: | family with sequence similarity 107, member B |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
