Difference between revisions of "TSS:Mm 101439.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Spnb-2= | |Spnb-2= | ||
|Spnb2= | |Spnb2= | ||
| + | |all_trans=LF226644:77 MA462221:77 LF226643:495 MA462220:495 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=77 |
|distance_to_tss=48180 | |distance_to_tss=48180 | ||
|elf1= | |elf1= | ||
| Line 14: | Line 15: | ||
|entrez_id=20742 | |entrez_id=20742 | ||
|gc_percent=0.323383 | |gc_percent=0.323383 | ||
| − | |gene_alias=9930031C03Rik | + | |gene_alias=9930031C03Rik{{!}}AL033301{{!}}SPTB2{{!}}Spnb-2{{!}}Spnb2{{!}}elf1{{!}}elf3{{!}}mKIAA4049 |
| − | |gene_description= | + | |gene_description=spectrin beta, non-erythrocytic 1 |
|gene_name=Sptbn1 | |gene_name=Sptbn1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 23: | Line 24: | ||
|nearest_refseq=NM_009260 | |nearest_refseq=NM_009260 | ||
|nearest_unigene=Mm.123110 | |nearest_unigene=Mm.123110 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=30150075 | |start=30150075 | ||
|start_of_center_position=30150077 | |start_of_center_position=30150077 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF226644 MA462221 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101439.1 | |tss_id=mm_101439.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:40, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 30150077 |
|---|---|
| End of the center position in the TSS region: | 30150078 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF226644 MA462221 |
|---|---|
| Distance: | 77 |
| Num_trans: | 4 |
| All_trans: | LF226644:77 MA462221:77 LF226643:495 MA462220:495 |
TATA-Box annotation
| Distance to TSS: | 48180 |
|---|---|
| Nearest PromoterID: | NM_009260 |
| Entrez ID: | 20742 |
| Nearest Unigene: | Mm.123110 |
| Nearest Refseq: | NM_009260 |
| Nearest Ensembl: | ENSMUSG00000020315 |
| Gene Name: | Sptbn1 |
| Gene Alias: | 9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049 |
| Gene Description: | spectrin beta, non-erythrocytic 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.323383 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
