Difference between revisions of "TSS:Mm 101518.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=854 | |distance_to_tss=854 | ||
|end=32534123 | |end=32534123 | ||
| Line 9: | Line 9: | ||
|entrez_id=20868 | |entrez_id=20868 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=Gek1 | + | |gene_alias=Gek1{{!}}Lok{{!}}mKIAA4026 |
|gene_description=serine/threonine kinase 10 | |gene_description=serine/threonine kinase 10 | ||
|gene_name=Stk10 | |gene_name=Stk10 | ||
| Line 15: | Line 15: | ||
|mKIAA4026= | |mKIAA4026= | ||
|nearest_ensembl=ENSMUSG00000020272 | |nearest_ensembl=ENSMUSG00000020272 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359177 |
|nearest_refseq=NM_009288 | |nearest_refseq=NM_009288 | ||
|nearest_unigene=Mm.8235 | |nearest_unigene=Mm.8235 | ||
| Line 23: | Line 23: | ||
|start_of_center_position=32534119 | |start_of_center_position=32534119 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=48(GTGTCTATATGG,-,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:42, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32534119 |
|---|---|
| End of the center position in the TSS region: | 32534120 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 854 |
|---|---|
| Nearest PromoterID: | NM_001359177 |
| Entrez ID: | 20868 |
| Nearest Unigene: | Mm.8235 |
| Nearest Refseq: | NM_009288 |
| Nearest Ensembl: | ENSMUSG00000020272 |
| Gene Name: | Stk10 |
| Gene Alias: | Gek1|Lok|mKIAA4026 |
| Gene Description: | serine/threonine kinase 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 48(GTGTCTATATGG,-,0.00) |
