Difference between revisions of "TSS:Mm 101776.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Olf-1= | |Olf-1= | ||
|Olf1= | |Olf1= | ||
| + | |all_trans=LF198446:-17 MA434023:-17 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=-17 |
|distance_to_tss=-33 | |distance_to_tss=-33 | ||
|end=44618069 | |end=44618069 | ||
| Line 12: | Line 13: | ||
|entrez_id=13591 | |entrez_id=13591 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
| − | |gene_alias=Ebf | + | |gene_alias=Ebf{{!}}O/E-1{{!}}OE-1{{!}}Olf-1{{!}}Olf1 |
|gene_description=early B cell factor 1 | |gene_description=early B cell factor 1 | ||
|gene_name=Ebf1 | |gene_name=Ebf1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000057098 | |nearest_ensembl=ENSMUSG00000057098 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001290710 |
|nearest_refseq=NM_007897 | |nearest_refseq=NM_007897 | ||
|nearest_unigene=Mm.439662 | |nearest_unigene=Mm.439662 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=44618065 | |start=44618065 | ||
|start_of_center_position=44618067 | |start_of_center_position=44618067 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF198446 MA434023 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101776.1 | |tss_id=mm_101776.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:48, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 44618067 |
|---|---|
| End of the center position in the TSS region: | 44618068 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198446 MA434023 |
|---|---|
| Distance: | -17 |
| Num_trans: | 2 |
| All_trans: | LF198446:-17 MA434023:-17 |
TATA-Box annotation
| Distance to TSS: | -33 |
|---|---|
| Nearest PromoterID: | NM_001290710 |
| Entrez ID: | 13591 |
| Nearest Unigene: | Mm.439662 |
| Nearest Refseq: | NM_007897 |
| Nearest Ensembl: | ENSMUSG00000057098 |
| Gene Name: | Ebf1 |
| Gene Alias: | Ebf|O/E-1|OE-1|Olf-1|Olf1 |
| Gene Description: | early B cell factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
