Difference between revisions of "TSS:Mm 124182.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000194056.1:0 ENSMUST00000195826.5:6 ENSMUST00000193901.5:6 NM_001271799:6 | + | |all_trans=ENSMUST00000194056.1:0 NM_001346722:0 ENSMUST00000195826.5:6 ENSMUST00000193901.5:6 NM_001271799:6 NM_001271800:6 NM_001271798:6 NM_001081377:6 AK147451:6 ENSMUST00000192221.5:46 BC060736:46 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001081377 | |nearest_refseq=NM_001081377 | ||
|nearest_unigene=Mm.37126 | |nearest_unigene=Mm.37126 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=93890674 | |start=93890674 | ||
|start_of_center_position=93890681 | |start_of_center_position=93890681 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000194056.1 | + | |transcript_name=ENSMUST00000194056.1 NM_001346722 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_124182.1 | |tss_id=mm_124182.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A0A6YWM0 | + | |uniprot_id=A0A0A6YWM0 A0A0A6YY09 |
}} | }} | ||
Revision as of 01:32, 20 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 93890681 |
|---|---|
| End of the center position in the TSS region: | 93890682 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000194056.1 NM_001346722 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENSMUST00000194056.1:0 NM_001346722:0 ENSMUST00000195826.5:6 ENSMUST00000193901.5:6 NM_001271799:6 NM_001271800:6 NM_001271798:6 NM_001081377:6 AK147451:6 ENSMUST00000192221.5:46 BC060736:46 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_001346722 |
| Entrez ID: | 211712 |
| Nearest Unigene: | Mm.37126 |
| Nearest Refseq: | NM_001081377 |
| Nearest Ensembl: | ENSMUSG00000055421 |
| Gene Name: | protocadherin 9 |
| Gene Alias: | - |
| Gene Description: | protocadherin 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
