Difference between revisions of "TSS:Mm 124183.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
− | |all_trans=ENSMUST00000194056.1:14 ENSMUST00000195826.5:24 ENSMUST00000193901.5:24 NM_001271799:24 | + | |all_trans=ENSMUST00000194056.1:14 NM_001346722:14 ENSMUST00000195826.5:24 ENSMUST00000193901.5:24 NM_001271799:24 NM_001271800:24 NM_001271798:24 NM_001081377:24 AK147451:24 ENSMUST00000192221.5:64 BC060736:64 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
Line 22: | Line 22: | ||
|nearest_refseq=NM_001081377 | |nearest_refseq=NM_001081377 | ||
|nearest_unigene=Mm.37126 | |nearest_unigene=Mm.37126 | ||
− | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=93890692 | |start=93890692 | ||
|start_of_center_position=93890704 | |start_of_center_position=93890704 | ||
|strand=- | |strand=- | ||
− | |transcript_name=ENSMUST00000194056.1 | + | |transcript_name=ENSMUST00000194056.1 NM_001346722 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_124183.1 | |tss_id=mm_124183.1 | ||
|tss_score=1 | |tss_score=1 | ||
− | |uniprot_id=A0A0A6YWM0 | + | |uniprot_id=A0A0A6YWM0 A0A0A6YY09 |
}} | }} |
Revision as of 01:32, 20 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 93890704 |
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End of the center position in the TSS region: | 93890705 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENSMUST00000194056.1 NM_001346722 |
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Distance: | 14 |
Num_trans: | 11 |
All_trans: | ENSMUST00000194056.1:14 NM_001346722:14 ENSMUST00000195826.5:24 ENSMUST00000193901.5:24 NM_001271799:24 NM_001271800:24 NM_001271798:24 NM_001081377:24 AK147451:24 ENSMUST00000192221.5:64 BC060736:64 |
TATA-Box annotation
Distance to TSS: | -25 |
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Nearest PromoterID: | NM_001346722 |
Entrez ID: | 211712 |
Nearest Unigene: | Mm.37126 |
Nearest Refseq: | NM_001081377 |
Nearest Ensembl: | ENSMUSG00000055421 |
Gene Name: | protocadherin 9 |
Gene Alias: | - |
Gene Description: | protocadherin 9 |
Gene Type: | protein-coding |
CpG%: | 0.045 |
GC%: | 0.58209 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |