Difference between revisions of "TSS:Mm 129075.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NM_194350:0 ENSMUST00000062002.5:91 BC156190:398 |
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=75748322 | |end=75748322 | ||
|end_of_center_position=75748321 | |end_of_center_position=75748321 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=RIPE3b1 | |gene_alias=RIPE3b1 | ||
| − | |gene_description= | + | |gene_description=v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian) |
|gene_id=378435 | |gene_id=378435 | ||
| − | |gene_name= | + | |gene_name=v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian) |
|gene_source=MGI:2673307 | |gene_source=MGI:2673307 | ||
|gene_symbol=Mafa | |gene_symbol=Mafa | ||
| Line 21: | Line 21: | ||
|nearest_promoter_id=NM_194350 | |nearest_promoter_id=NM_194350 | ||
|nearest_refseq=NM_194350 | |nearest_refseq=NM_194350 | ||
| − | |nearest_unigene= | + | |nearest_unigene= |
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=75748318 | |start=75748318 | ||
|start_of_center_position=75748320 | |start_of_center_position=75748320 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-37(GTCTCTATAAAG,-,0.00),-35(CTCTATAAAGGC,+,0.00),-35(CTCTATAAAGGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=NM_194350 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_129075.1 | |tss_id=mm_129075.1 | ||
Revision as of 03:28, 20 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 75748320 |
|---|---|
| End of the center position in the TSS region: | 75748321 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_194350 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | NM_194350:0 ENSMUST00000062002.5:91 BC156190:398 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_194350 |
| Entrez ID: | 378435 |
| Nearest Unigene: | |
| Nearest Refseq: | NM_194350 |
| Nearest Ensembl: | ENSMUSG00000047591 |
| Gene Name: | v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian) |
| Gene Alias: | RIPE3b1 |
| Gene Description: | v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian) |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -37(GTCTCTATAAAG,-,0.00),-35(CTCTATAAAGGC,+,0.00),-35(CTCTATAAAGGC,-,0.00) |
