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Difference between revisions of "TSS:Mm 129743.1"

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Line 6: Line 6:
 
|Bcmd1=
 
|Bcmd1=
 
|Lvis22=
 
|Lvis22=
|all_trans=AK172406:0 AF373847:12 AF350257:17 ENSMUST00000109535.2:26 uc007wyl.1:26 AK156387:26 ENSMUST00000089161.8:29 NM_028075:29 uc007wyj.1:29 uc007wyk.1:29 AK008142:31 BC104126:36 BC104127:36 DQ294928:53 DQ294929:53
+
|all_trans=ENSMUST00000231049.1:0 AK172406:0 NM_001357758:-1 NM_028075:-1 ENSMUST00000089161.9:12 AF373847:12 AF350257:17 ENSMUST00000109535.2:26 AK156387:26 AK008142:31 BC104126:36 BC104127:36 DQ294928:53 DQ294929:53 ENSMUST00000229984.1:63
 
|chr=chr15
 
|chr=chr15
 
|cpg_percent=0.07
 
|cpg_percent=0.07
 
|distance=0
 
|distance=0
|distance_to_tss=-36
+
|distance_to_tss=8
 
|end=82224379
 
|end=82224379
 
|end_of_center_position=82224372
 
|end_of_center_position=82224372
 
|entrez_id=72049
 
|entrez_id=72049
 
|gc_percent=0.661692
 
|gc_percent=0.661692
|gene_alias=2010006P15Rik
+
|gene_alias=2010006P15Rik{{!}}BAFF-R{{!}}Baffr{{!}}Bcmd{{!}}Bcmd-1{{!}}Bcmd1{{!}}Lvis22
|gene_description="tumor necrosis factor receptor superfamily, member 13c"
+
|gene_description=tumor necrosis factor receptor superfamily, member 13c
 
|gene_id=72049
 
|gene_id=72049
|gene_name="tumor necrosis factor receptor superfamily, member 13c"
+
|gene_name=tumor necrosis factor receptor superfamily, member 13c
 
|gene_source=MGI:1919299
 
|gene_source=MGI:1919299
 
|gene_symbol=Tnfrsf13c
 
|gene_symbol=Tnfrsf13c
Line 33: Line 33:
 
|start_of_center_position=82224371
 
|start_of_center_position=82224371
 
|strand=-
 
|strand=-
|transcript_name=AK172406
+
|transcript_name=ENSMUST00000231049.1 AK172406
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=mm_129743.1
 
|tss_id=mm_129743.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=
+
|uniprot_id=Q3SXS7
 
}}
 
}}

Revision as of 03:44, 20 June 2021

Basic information about the TSS


TSS ID:mm_129743.1
Species:mouse
Chr:chr15
TSS Classification:yes
Start:82224364
End:82224379
Strand:-
TSS Score:1
Start of the center position in the TSS region:82224371
End of the center position in the TSS region:82224372



Gene and protein annotation


Transcript_name:ENSMUST00000231049.1 AK172406
Distance:0
GeneID:72049
HGNC/MGI_ID:MGI:1919299
UniProt_ID:Q3SXS7
Gene_name:tumor necrosis factor receptor superfamily, member 13c
Gene_symbol:Tnfrsf13c
Gene_synonyms:2010006P15Rik BAFF-R Baffr Bcmd-1 Bcmd1 Lvis22
Gene_source:MGI:1919299



Transcript annotation


Transcript_name:ENSMUST00000231049.1 AK172406
Distance:0
Num_trans:15
All_trans:ENSMUST00000231049.1:0 AK172406:0 NM_001357758:-1 NM_028075:-1 ENSMUST00000089161.9:12 AF373847:12 AF350257:17 ENSMUST00000109535.2:26 AK156387:26 AK008142:31 BC104126:36 BC104127:36 DQ294928:53 DQ294929:53 ENSMUST00000229984.1:63



TATA-Box annotation


Distance to TSS:8
Nearest PromoterID:NM_028075
Entrez ID:72049
Nearest Unigene:Mm.240047
Nearest Refseq:NM_028075
Nearest Ensembl:ENSMUSG00000068105
Gene Name:tumor necrosis factor receptor superfamily, member 13c
Gene Alias:2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22
Gene Description:tumor necrosis factor receptor superfamily, member 13c
Gene Type:protein-coding
CpG%:0.07
GC%:0.661692
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):