Difference between revisions of "TSS:Mm 129743.1"
From referenceTSS
Line 6: | Line 6: | ||
|Bcmd1= | |Bcmd1= | ||
|Lvis22= | |Lvis22= | ||
− | |all_trans=AK172406:0 AF373847:12 AF350257:17 ENSMUST00000109535.2 | + | |all_trans=ENSMUST00000231049.1:0 AK172406:0 NM_001357758:-1 NM_028075:-1 ENSMUST00000089161.9:12 AF373847:12 AF350257:17 ENSMUST00000109535.2:26 AK156387:26 AK008142:31 BC104126:36 BC104127:36 DQ294928:53 DQ294929:53 ENSMUST00000229984.1:63 |
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
− | |distance_to_tss= | + | |distance_to_tss=8 |
|end=82224379 | |end=82224379 | ||
|end_of_center_position=82224372 | |end_of_center_position=82224372 | ||
|entrez_id=72049 | |entrez_id=72049 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
− | |gene_alias=2010006P15Rik | + | |gene_alias=2010006P15Rik{{!}}BAFF-R{{!}}Baffr{{!}}Bcmd{{!}}Bcmd-1{{!}}Bcmd1{{!}}Lvis22 |
− | |gene_description= | + | |gene_description=tumor necrosis factor receptor superfamily, member 13c |
|gene_id=72049 | |gene_id=72049 | ||
− | |gene_name= | + | |gene_name=tumor necrosis factor receptor superfamily, member 13c |
|gene_source=MGI:1919299 | |gene_source=MGI:1919299 | ||
|gene_symbol=Tnfrsf13c | |gene_symbol=Tnfrsf13c | ||
Line 33: | Line 33: | ||
|start_of_center_position=82224371 | |start_of_center_position=82224371 | ||
|strand=- | |strand=- | ||
− | |transcript_name=AK172406 | + | |transcript_name=ENSMUST00000231049.1 AK172406 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_129743.1 | |tss_id=mm_129743.1 | ||
|tss_score=1 | |tss_score=1 | ||
− | |uniprot_id= | + | |uniprot_id=Q3SXS7 |
}} | }} |
Revision as of 03:44, 20 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 82224371 |
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End of the center position in the TSS region: | 82224372 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENSMUST00000231049.1 AK172406 |
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Distance: | 0 |
Num_trans: | 15 |
All_trans: | ENSMUST00000231049.1:0 AK172406:0 NM_001357758:-1 NM_028075:-1 ENSMUST00000089161.9:12 AF373847:12 AF350257:17 ENSMUST00000109535.2:26 AK156387:26 AK008142:31 BC104126:36 BC104127:36 DQ294928:53 DQ294929:53 ENSMUST00000229984.1:63 |
TATA-Box annotation
Distance to TSS: | 8 |
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Nearest PromoterID: | NM_028075 |
Entrez ID: | 72049 |
Nearest Unigene: | Mm.240047 |
Nearest Refseq: | NM_028075 |
Nearest Ensembl: | ENSMUSG00000068105 |
Gene Name: | tumor necrosis factor receptor superfamily, member 13c |
Gene Alias: | 2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22 |
Gene Description: | tumor necrosis factor receptor superfamily, member 13c |
Gene Type: | protein-coding |
CpG%: | 0.07 |
GC%: | 0.661692 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |