Difference between revisions of "TSS:Mm 135311.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Cdgap= | |Cdgap= | ||
|D330026I07Rik= | |D330026I07Rik= | ||
| − | |all_trans=NM_020260 | + | |all_trans=NM_020260:34 ENSMUST00000124866.1:170 AK018057:170 ENSMUST00000132697.1:171 AK045213:171 AK136348:-172 ENSMUST00000023487.4:-191 AK138417:-191 AK149975:199 AK150109:199 AK155729:214 AK170685:216 BC138870:229 AF151363:393 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 12: | Line 12: | ||
|entrez_id=12549 | |entrez_id=12549 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=5830477L08Rik | + | |gene_alias=5830477L08Rik{{!}}AU041750{{!}}Cdgap{{!}}D330026I07Rik |
|gene_description=Rho GTPase activating protein 31 | |gene_description=Rho GTPase activating protein 31 | ||
|gene_id=12549 | |gene_id=12549 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_020260 | |nearest_refseq=NM_020260 | ||
|nearest_unigene=Mm.370848 | |nearest_unigene=Mm.370848 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=38713068 | |start=38713068 | ||
|start_of_center_position=38713075 | |start_of_center_position=38713075 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_020260 | + | |transcript_name=NM_020260 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_135311.1 | |tss_id=mm_135311.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B2RSI0 |
}} | }} | ||
Revision as of 05:55, 20 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 38713075 |
|---|---|
| End of the center position in the TSS region: | 38713076 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_020260 |
|---|---|
| Distance: | 34 |
| Num_trans: | 14 |
| All_trans: | NM_020260:34 ENSMUST00000124866.1:170 AK018057:170 ENSMUST00000132697.1:171 AK045213:171 AK136348:-172 ENSMUST00000023487.4:-191 AK138417:-191 AK149975:199 AK150109:199 AK155729:214 AK170685:216 BC138870:229 AF151363:393 |
TATA-Box annotation
| Distance to TSS: | -41 |
|---|---|
| Nearest PromoterID: | NM_020260 |
| Entrez ID: | 12549 |
| Nearest Unigene: | Mm.370848 |
| Nearest Refseq: | NM_020260 |
| Nearest Ensembl: | ENSMUSG00000022799 |
| Gene Name: | Rho GTPase activating protein 31 |
| Gene Alias: | 5830477L08Rik|AU041750|Cdgap|D330026I07Rik |
| Gene Description: | Rho GTPase activating protein 31 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
