Difference between revisions of "TSS:Mm 146761.1"
From referenceTSS
| Line 2: | Line 2: | ||
|N-CAD= | |N-CAD= | ||
|Ncad= | |Ncad= | ||
| − | |all_trans= | + | |all_trans=ENSMUST00000025166.13:-159 NM_007664:-159 AK146981:-159 AB008811:336 M31131:336 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=-159 |
|distance_to_tss=170 | |distance_to_tss=170 | ||
|end=16809087 | |end=16809087 | ||
| Line 11: | Line 11: | ||
|entrez_id=12558 | |entrez_id=12558 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=CDHN | + | |gene_alias=CDHN{{!}}N-CAD{{!}}Ncad |
|gene_description=cadherin 2 | |gene_description=cadherin 2 | ||
|gene_id=12558 | |gene_id=12558 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_007664 | |nearest_refseq=NM_007664 | ||
|nearest_unigene=Mm.257437 | |nearest_unigene=Mm.257437 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=16809065 | |start=16809065 | ||
|start_of_center_position=16809076 | |start_of_center_position=16809076 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000025166.13 NM_007664 AK146981 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_146761.1 | |tss_id=mm_146761.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P15116 | + | |uniprot_id=P15116 Q3UIC2 Q8BSI9 |
}} | }} | ||
Revision as of 10:20, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16809076 |
|---|---|
| End of the center position in the TSS region: | 16809077 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000025166.13 NM_007664 AK146981 |
|---|---|
| Distance: | -159 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000025166.13:-159 NM_007664:-159 AK146981:-159 AB008811:336 M31131:336 |
TATA-Box annotation
| Distance to TSS: | 170 |
|---|---|
| Nearest PromoterID: | NM_007664 |
| Entrez ID: | 12558 |
| Nearest Unigene: | Mm.257437 |
| Nearest Refseq: | NM_007664 |
| Nearest Ensembl: | ENSMUSG00000024304 |
| Gene Name: | cadherin 2 |
| Gene Alias: | CDHN|N-CAD|Ncad |
| Gene Description: | cadherin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
