Difference between revisions of "TSS:Mm 147187.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000180516.2 | + | |all_trans=ENSMUST00000180516.2:179 AK042845:179 ENSMUST00000192479.1:187 AK046617:187 ENSMUST00000181887.1:195 AK136271:195 AK080748:238 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=179 | |distance=179 | ||
| − | |distance_to_tss= | + | |distance_to_tss=35030 |
|end=37178716 | |end=37178716 | ||
|end_of_center_position=37178709 | |end_of_center_position=37178709 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
|gene_alias=CNRc2 | |gene_alias=CNRc2 | ||
| − | |gene_description= | + | |gene_description=protocadherin alpha subfamily C, 2 |
|gene_id=100038509 | |gene_id=100038509 | ||
|gene_name=predicted gene 10544 | |gene_name=predicted gene 10544 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001003672 | |nearest_refseq=NM_001003672 | ||
|nearest_unigene=Mm.308500 | |nearest_unigene=Mm.308500 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=37178700 | |start=37178700 | ||
|start_of_center_position=37178708 | |start_of_center_position=37178708 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000180516.2 | + | |transcript_name=ENSMUST00000180516.2 AK042845 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_147187.1 | |tss_id=mm_147187.1 | ||
Revision as of 10:30, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37178708 |
|---|---|
| End of the center position in the TSS region: | 37178709 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000180516.2 AK042845 |
|---|---|
| Distance: | 179 |
| Num_trans: | 7 |
| All_trans: | ENSMUST00000180516.2:179 AK042845:179 ENSMUST00000192479.1:187 AK046617:187 ENSMUST00000181887.1:195 AK136271:195 AK080748:238 |
TATA-Box annotation
| Distance to TSS: | 35030 |
|---|---|
| Nearest PromoterID: | NM_001003672 |
| Entrez ID: | 353237 |
| Nearest Unigene: | Mm.308500 |
| Nearest Refseq: | NM_001003672 |
| Nearest Ensembl: | ENSMUSG00000102697 |
| Gene Name: | predicted gene 10544 |
| Gene Alias: | CNRc2 |
| Gene Description: | protocadherin alpha subfamily C, 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
