Difference between revisions of "TSS:Mm 1519.1"
From referenceTSS
| Line 2: | Line 2: | ||
|IBP-2= | |IBP-2= | ||
|Igfbp-2= | |Igfbp-2= | ||
| − | |all_trans=AK011784:0 X81580:-6 BC054473:-7 ENSMUST00000047328.10:-11 BC012724:-11 AK012703:-22 NM_008342 | + | |all_trans=AK011784:0 X81580:-6 BC054473:-7 ENSMUST00000047328.10:-11 BC012724:-11 AK012703:-22 NM_008342:-34 AK011790:47 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| Line 11: | Line 11: | ||
|entrez_id=16008 | |entrez_id=16008 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=AI255832 | + | |gene_alias=AI255832{{!}}IBP-2{{!}}Igfbp-2{{!}}mIGFBP-2 |
|gene_description=insulin-like growth factor binding protein 2 | |gene_description=insulin-like growth factor binding protein 2 | ||
|gene_id=16008 | |gene_id=16008 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_008342 | |nearest_refseq=NM_008342 | ||
|nearest_unigene=Mm.141936 | |nearest_unigene=Mm.141936 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=72824513 | |start=72824513 | ||
|start_of_center_position=72824517 | |start_of_center_position=72824517 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-60(GGCTTTTTAGGA,-,0.00) |
|transcript_name=AK011784 | |transcript_name=AK011784 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 12:20, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72824517 |
|---|---|
| End of the center position in the TSS region: | 72824518 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK011784 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | AK011784:0 X81580:-6 BC054473:-7 ENSMUST00000047328.10:-11 BC012724:-11 AK012703:-22 NM_008342:-34 AK011790:47 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NM_008342 |
| Entrez ID: | 16008 |
| Nearest Unigene: | Mm.141936 |
| Nearest Refseq: | NM_008342 |
| Nearest Ensembl: | ENSMUSG00000039323 |
| Gene Name: | insulin-like growth factor binding protein 2 |
| Gene Alias: | AI255832|IBP-2|Igfbp-2|mIGFBP-2 |
| Gene Description: | insulin-like growth factor binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -60(GGCTTTTTAGGA,-,0.00) |
