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Difference between revisions of "TSS:Mm 159923.1"

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Line 3: Line 3:
 
|CRFR2beta=
 
|CRFR2beta=
 
|Crfr2=
 
|Crfr2=
|all_trans=ENSMUST00000114374.8:-53 NM_001288619:-53 NM_001288620:-53 uc009caj.3:-53 uc012emh.2:-53 AY445512:-53 ENSMUST00000169777.1:89 ENSMUST00000095898.9:-125 AY753668:-125
+
|all_trans=ENSMUST00000114374.8:-53 ENSMUST00000213026.1:-53 NM_001288619:-53 NM_001288620:-53 AY445512:-53 ENSMUST00000169777.1:89 ENSMUST00000095898.9:-125 AY753668:-125
 
|chr=chr6
 
|chr=chr6
 
|cpg_percent=0.125
 
|cpg_percent=0.125
Line 12: Line 12:
 
|entrez_id=12922
 
|entrez_id=12922
 
|gc_percent=0.736318
 
|gc_percent=0.736318
|gene_alias=CRF-R2
+
|gene_alias=CRF-R2{{!}}CRFR2alpha{{!}}CRFR2beta{{!}}Crfr2
 
|gene_description=corticotropin releasing hormone receptor 2
 
|gene_description=corticotropin releasing hormone receptor 2
 
|gene_id=12922
 
|gene_id=12922
Line 22: Line 22:
 
|hgnc_mgi_id=MGI:894312
 
|hgnc_mgi_id=MGI:894312
 
|nearest_ensembl=ENSMUSG00000003476
 
|nearest_ensembl=ENSMUSG00000003476
|nearest_promoter_id=NM_001288619
+
|nearest_promoter_id=NM_001288620
 
|nearest_refseq=NM_009953
 
|nearest_refseq=NM_009953
 
|nearest_unigene=Mm.236081
 
|nearest_unigene=Mm.236081
|num_trans=9
+
|num_trans=8
 
|species=mouse
 
|species=mouse
 
|start=55117859
 
|start=55117859
 
|start_of_center_position=55117859
 
|start_of_center_position=55117859
 
|strand=-
 
|strand=-
|transcript_name=ENSMUST00000114374.8 NM_001288619 NM_001288620 uc009caj.3 uc012emh.2 AY445512
+
|transcript_name=ENSMUST00000114374.8 ENSMUST00000213026.1 NM_001288619 NM_001288620 AY445512
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=mm_159923.1
 
|tss_id=mm_159923.1

Revision as of 15:25, 20 June 2021

Basic information about the TSS


TSS ID:mm_159923.1
Species:mouse
Chr:chr6
TSS Classification:yes
Start:55117859
End:55117860
Strand:-
TSS Score:1
Start of the center position in the TSS region:55117859
End of the center position in the TSS region:55117860



Gene and protein annotation


Transcript_name:ENSMUST00000114374.8 ENSMUST00000213026.1 NM_001288619 NM_001288620 AY445512
Distance:-53
GeneID:12922
HGNC/MGI_ID:MGI:894312
UniProt_ID:E9QNK5 Q5ERJ2 Q60748
Gene_name:corticotropin releasing hormone receptor 2
Gene_symbol:Crhr2
Gene_synonyms:CRF-R2 CRFR2alpha CRFR2beta CRF_2_receptor CRH-R2 Crfr2
Gene_source:MGI:894312



Transcript annotation


Transcript_name:ENSMUST00000114374.8 ENSMUST00000213026.1 NM_001288619 NM_001288620 AY445512
Distance:-53
Num_trans:8
All_trans:ENSMUST00000114374.8:-53 ENSMUST00000213026.1:-53 NM_001288619:-53 NM_001288620:-53 AY445512:-53 ENSMUST00000169777.1:89 ENSMUST00000095898.9:-125 AY753668:-125



TATA-Box annotation


Distance to TSS:53
Nearest PromoterID:NM_001288620
Entrez ID:12922
Nearest Unigene:Mm.236081
Nearest Refseq:NM_009953
Nearest Ensembl:ENSMUSG00000003476
Gene Name:corticotropin releasing hormone receptor 2
Gene Alias:CRF-R2|CRFR2alpha|CRFR2beta|Crfr2
Gene Description:corticotropin releasing hormone receptor 2
Gene Type:protein-coding
CpG%:0.125
GC%:0.736318
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):