Difference between revisions of "TSS:Mm 159923.1"
From referenceTSS
Line 3: | Line 3: | ||
|CRFR2beta= | |CRFR2beta= | ||
|Crfr2= | |Crfr2= | ||
− | |all_trans=ENSMUST00000114374.8:-53 | + | |all_trans=ENSMUST00000114374.8:-53 ENSMUST00000213026.1:-53 NM_001288619:-53 NM_001288620:-53 AY445512:-53 ENSMUST00000169777.1:89 ENSMUST00000095898.9:-125 AY753668:-125 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
Line 12: | Line 12: | ||
|entrez_id=12922 | |entrez_id=12922 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
− | |gene_alias=CRF-R2 | + | |gene_alias=CRF-R2{{!}}CRFR2alpha{{!}}CRFR2beta{{!}}Crfr2 |
|gene_description=corticotropin releasing hormone receptor 2 | |gene_description=corticotropin releasing hormone receptor 2 | ||
|gene_id=12922 | |gene_id=12922 | ||
Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:894312 | |hgnc_mgi_id=MGI:894312 | ||
|nearest_ensembl=ENSMUSG00000003476 | |nearest_ensembl=ENSMUSG00000003476 | ||
− | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001288620 |
|nearest_refseq=NM_009953 | |nearest_refseq=NM_009953 | ||
|nearest_unigene=Mm.236081 | |nearest_unigene=Mm.236081 | ||
− | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=55117859 | |start=55117859 | ||
|start_of_center_position=55117859 | |start_of_center_position=55117859 | ||
|strand=- | |strand=- | ||
− | |transcript_name=ENSMUST00000114374.8 NM_001288619 NM_001288620 | + | |transcript_name=ENSMUST00000114374.8 ENSMUST00000213026.1 NM_001288619 NM_001288620 AY445512 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_159923.1 | |tss_id=mm_159923.1 |
Revision as of 15:25, 20 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 55117859 |
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End of the center position in the TSS region: | 55117860 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENSMUST00000114374.8 ENSMUST00000213026.1 NM_001288619 NM_001288620 AY445512 |
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Distance: | -53 |
Num_trans: | 8 |
All_trans: | ENSMUST00000114374.8:-53 ENSMUST00000213026.1:-53 NM_001288619:-53 NM_001288620:-53 AY445512:-53 ENSMUST00000169777.1:89 ENSMUST00000095898.9:-125 AY753668:-125 |
TATA-Box annotation
Distance to TSS: | 53 |
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Nearest PromoterID: | NM_001288620 |
Entrez ID: | 12922 |
Nearest Unigene: | Mm.236081 |
Nearest Refseq: | NM_009953 |
Nearest Ensembl: | ENSMUSG00000003476 |
Gene Name: | corticotropin releasing hormone receptor 2 |
Gene Alias: | CRF-R2|CRFR2alpha|CRFR2beta|Crfr2 |
Gene Description: | corticotropin releasing hormone receptor 2 |
Gene Type: | protein-coding |
CpG%: | 0.125 |
GC%: | 0.736318 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |