Difference between revisions of "TSS:Mm 160988.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PKUalpha= | |PKUalpha= | ||
|Tlk= | |Tlk= | ||
| − | |all_trans=ENSMUST00000092537.9:80 AK014829:177 AK165667:-183 ENSMUST00000106941.8:-186 | + | |all_trans=ENSMUST00000092537.9:80 AK014829:177 AK165667:-183 ENSMUST00000106941.8:-186 NM_001361996:-186 NM_001294330:-186 NM_001112705:-186 NM_001294329:-186 NM_001294334:-186 ENSMUST00000015107.12:204 ENSMUST00000145048.7:269 BC066198:269 ENSMUST00000126175.7:286 AK089925:286 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 12: | Line 12: | ||
|entrez_id=24086 | |entrez_id=24086 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=4933403M19Rik | + | |gene_alias=4933403M19Rik{{!}}PKU-alpha{{!}}PKUalpha{{!}}Tlk |
|gene_description=tousled-like kinase 2 (Arabidopsis) | |gene_description=tousled-like kinase 2 (Arabidopsis) | ||
|gene_id=24086 | |gene_id=24086 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1346023 | |hgnc_mgi_id=MGI:1346023 | ||
|nearest_ensembl=ENSMUSG00000020694 | |nearest_ensembl=ENSMUSG00000020694 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001294334 |
|nearest_refseq=NM_011903 | |nearest_refseq=NM_011903 | ||
|nearest_unigene=Mm.126976 | |nearest_unigene=Mm.126976 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=105181712 | |start=105181712 | ||
Revision as of 15:50, 20 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 105181712 |
|---|---|
| End of the center position in the TSS region: | 105181713 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000092537.9 |
|---|---|
| Distance: | 80 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000092537.9:80 AK014829:177 AK165667:-183 ENSMUST00000106941.8:-186 NM_001361996:-186 NM_001294330:-186 NM_001112705:-186 NM_001294329:-186 NM_001294334:-186 ENSMUST00000015107.12:204 ENSMUST00000145048.7:269 BC066198:269 ENSMUST00000126175.7:286 AK089925:286 |
TATA-Box annotation
| Distance to TSS: | 186 |
|---|---|
| Nearest PromoterID: | NM_001294334 |
| Entrez ID: | 24086 |
| Nearest Unigene: | Mm.126976 |
| Nearest Refseq: | NM_011903 |
| Nearest Ensembl: | ENSMUSG00000020694 |
| Gene Name: | tousled-like kinase 2 (Arabidopsis) |
| Gene Alias: | 4933403M19Rik|PKU-alpha|PKUalpha|Tlk |
| Gene Description: | tousled-like kinase 2 (Arabidopsis) |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
