Difference between revisions of "TSS:Mm 161022.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000151495.7:-119 BC069960:-119 FM204885:-130 FM204886:-130 NM_001146073:-179 | + | |all_trans=ENSMUST00000151495.7:-119 BC069960:-119 FM204885:-130 FM204886:-130 NM_001146073:-179 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 9: | Line 9: | ||
|entrez_id=238023 | |entrez_id=238023 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=BC069960 | + | |gene_alias=BC069960{{!}}Hexd |
| − | |gene_description= | + | |gene_description=hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing |
|gene_id=238023 | |gene_id=238023 | ||
| − | |gene_name= | + | |gene_name=hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing |
|gene_source=MGI:3605542 | |gene_source=MGI:3605542 | ||
|gene_symbol=Hexdc | |gene_symbol=Hexdc | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001001333 | |nearest_refseq=NM_001001333 | ||
|nearest_unigene=Mm.275130 | |nearest_unigene=Mm.275130 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=121207821 | |start=121207821 | ||
|start_of_center_position=121207821 | |start_of_center_position=121207821 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-89(GGACCTTAAAGG,-,0.00),-88(GACCTTAAAGGA,-,0.00) |
|transcript_name=ENSMUST00000151495.7 BC069960 | |transcript_name=ENSMUST00000151495.7 BC069960 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 15:50, 20 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 121207821 |
|---|---|
| End of the center position in the TSS region: | 121207822 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000151495.7 BC069960 |
|---|---|
| Distance: | -119 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000151495.7:-119 BC069960:-119 FM204885:-130 FM204886:-130 NM_001146073:-179 |
TATA-Box annotation
| Distance to TSS: | 179 |
|---|---|
| Nearest PromoterID: | NM_001146073 |
| Entrez ID: | 238023 |
| Nearest Unigene: | Mm.275130 |
| Nearest Refseq: | NM_001001333 |
| Nearest Ensembl: | ENSMUSG00000039307 |
| Gene Name: | hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing |
| Gene Alias: | BC069960|Hexd |
| Gene Description: | hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -89(GGACCTTAAAGG,-,0.00),-88(GACCTTAAAGGA,-,0.00) |
