Difference between revisions of "TSS:Mm 16512.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|BC021513= | |BC021513= | ||
| − | |all_trans=BC004646:16 BC027218:16 AK052236:26 ENSMUST00000131284.7:-38 AK173276:-38 BC021513:-54 AK049764:-65 ENSMUST00000116366.8:-67 NM_001048148 | + | |all_trans=BC004646:16 BC027218:16 AK052236:26 ENSMUST00000131284.7:-38 AK173276:-38 BC021513:-54 AK049764:-65 ENSMUST00000116366.8:-67 NM_001048148:-67 BC034599:-67 ENSMUST00000108807.8:-85 AK159801:-85 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 10: | Line 10: | ||
|entrez_id=229007 | |entrez_id=229007 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=1500006I01Rik | + | |gene_alias=1500006I01Rik{{!}}BC021513 |
| − | |gene_description= | + | |gene_description=zinc finger, CCCH-type with G patch domain |
|gene_id=229007 | |gene_id=229007 | ||
| − | |gene_name= | + | |gene_name=zinc finger, CCCH-type with G patch domain |
|gene_source=MGI:2449939 | |gene_source=MGI:2449939 | ||
|gene_symbol=Zgpat | |gene_symbol=Zgpat | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_144894 | |nearest_refseq=NM_144894 | ||
|nearest_unigene=Mm.87720 | |nearest_unigene=Mm.87720 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=181365489 | |start=181365489 | ||
Revision as of 17:23, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 181365494 |
|---|---|
| End of the center position in the TSS region: | 181365495 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC004646 BC027218 |
|---|---|
| Distance: | 16 |
| Num_trans: | 12 |
| All_trans: | BC004646:16 BC027218:16 AK052236:26 ENSMUST00000131284.7:-38 AK173276:-38 BC021513:-54 AK049764:-65 ENSMUST00000116366.8:-67 NM_001048148:-67 BC034599:-67 ENSMUST00000108807.8:-85 AK159801:-85 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001048148 |
| Entrez ID: | 229007 |
| Nearest Unigene: | Mm.87720 |
| Nearest Refseq: | NM_144894 |
| Nearest Ensembl: | ENSMUSG00000027582 |
| Gene Name: | zinc finger, CCCH-type with G patch domain |
| Gene Alias: | 1500006I01Rik|BC021513 |
| Gene Description: | zinc finger, CCCH-type with G patch domain |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
