Difference between revisions of "TSS:Mm 168320.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Ts= | |Ts= | ||
|Tss= | |Tss= | ||
| − | |all_trans=AK002659:11 | + | |all_trans=AK002659:11 NM_001048058:13 NM_001048057:13 NM_001362918:13 NM_023372:13 ENSMUST00000077915.9:-17 AK010518:24 AK012391:24 BC055346:24 BC034339:37 AK010277:40 AK151517:40 ENSMUST00000106602.9:-41 AB037665:-41 ENSMUST00000106599.7:42 BC047046:50 ENSMUST00000082092.4:59 BC094258:214 BC094644:214 BC081447:230 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=11 | |distance=11 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-14 |
|end=114668567 | |end=114668567 | ||
|end_of_center_position=114668566 | |end_of_center_position=114668566 | ||
|entrez_id=67671 | |entrez_id=67671 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=0610025G13Rik | + | |gene_alias=0610025G13Rik{{!}}Rbt{{!}}Ts{{!}}Tss |
|gene_description=ribosomal protein L38 | |gene_description=ribosomal protein L38 | ||
|gene_id=67671 | |gene_id=67671 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1914921 | |hgnc_mgi_id=MGI:1914921 | ||
|nearest_ensembl=ENSMUSG00000057322 | |nearest_ensembl=ENSMUSG00000057322 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_023372 |
|nearest_refseq=NM_023372 | |nearest_refseq=NM_023372 | ||
|nearest_unigene=Mm.238817 | |nearest_unigene=Mm.238817 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=mouse | |species=mouse | ||
|start=114668564 | |start=114668564 | ||
Revision as of 18:37, 20 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 114668565 |
|---|---|
| End of the center position in the TSS region: | 114668566 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK002659 |
|---|---|
| Distance: | 11 |
| Num_trans: | 20 |
| All_trans: | AK002659:11 NM_001048058:13 NM_001048057:13 NM_001362918:13 NM_023372:13 ENSMUST00000077915.9:-17 AK010518:24 AK012391:24 BC055346:24 BC034339:37 AK010277:40 AK151517:40 ENSMUST00000106602.9:-41 AB037665:-41 ENSMUST00000106599.7:42 BC047046:50 ENSMUST00000082092.4:59 BC094258:214 BC094644:214 BC081447:230 |
TATA-Box annotation
| Distance to TSS: | -14 |
|---|---|
| Nearest PromoterID: | NM_023372 |
| Entrez ID: | 67671 |
| Nearest Unigene: | Mm.238817 |
| Nearest Refseq: | NM_023372 |
| Nearest Ensembl: | ENSMUSG00000057322 |
| Gene Name: | ribosomal protein L38 |
| Gene Alias: | 0610025G13Rik|Rbt|Ts|Tss |
| Gene Description: | ribosomal protein L38 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
