Difference between revisions of "TSS:Mm 168400.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000143418.1:1 ENSMUST00000150739.1:10 AK018706:31 ENSMUST00000102844.3:32 BC002108:42 BC081446:146 BC096392:146 | + | |all_trans=ENSMUST00000143418.1:1 ENSMUST00000150739.1:10 AK018706:31 ENSMUST00000102844.3:32 BC002108:42 BC081446:146 BC096392:146 NM_001033865:-148 NM_024277:-148 ENSMUST00000102845.10:-217 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| Line 11: | Line 11: | ||
|gene_alias=1700034F02Rik | |gene_alias=1700034F02Rik | ||
|gene_description=clathrin heavy chain linker domain containing 1 | |gene_description=clathrin heavy chain linker domain containing 1 | ||
| − | |gene_id= | + | |gene_id=78294 |
|gene_name=ribosomal protein S27A | |gene_name=ribosomal protein S27A | ||
|gene_source=MGI:1925544 | |gene_source=MGI:1925544 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_028504 | |nearest_refseq=NM_028504 | ||
|nearest_unigene=Mm.69388 | |nearest_unigene=Mm.69388 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=29547891 | |start=29547891 | ||
Revision as of 18:39, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 29547891 |
|---|---|
| End of the center position in the TSS region: | 29547892 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000143418.1 |
|---|---|
| Distance: | 1 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000143418.1:1 ENSMUST00000150739.1:10 AK018706:31 ENSMUST00000102844.3:32 BC002108:42 BC081446:146 BC096392:146 NM_001033865:-148 NM_024277:-148 ENSMUST00000102845.10:-217 |
TATA-Box annotation
| Distance to TSS: | -58 |
|---|---|
| Nearest PromoterID: | NM_028504 |
| Entrez ID: | 73324 |
| Nearest Unigene: | Mm.69388 |
| Nearest Refseq: | NM_028504 |
| Nearest Ensembl: | ENSMUSG00000020461 |
| Gene Name: | ribosomal protein S27A |
| Gene Alias: | 1700034F02Rik |
| Gene Description: | clathrin heavy chain linker domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
