Difference between revisions of "TSS:Mm 168401.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000143418.1:9 ENSMUST00000150739.1:18 AK018706:39 ENSMUST00000102844.3:40 BC002108:50 | + | |all_trans=ENSMUST00000143418.1:9 ENSMUST00000150739.1:18 AK018706:39 ENSMUST00000102844.3:40 BC002108:50 NM_001033865:-140 NM_024277:-140 BC081446:154 BC096392:154 ENSMUST00000102845.10:-209 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 11: | Line 11: | ||
|gene_alias=1700034F02Rik | |gene_alias=1700034F02Rik | ||
|gene_description=clathrin heavy chain linker domain containing 1 | |gene_description=clathrin heavy chain linker domain containing 1 | ||
| − | |gene_id= | + | |gene_id=78294 |
|gene_name=ribosomal protein S27A | |gene_name=ribosomal protein S27A | ||
|gene_source=MGI:1925544 | |gene_source=MGI:1925544 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_028504 | |nearest_refseq=NM_028504 | ||
|nearest_unigene=Mm.69388 | |nearest_unigene=Mm.69388 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=29547899 | |start=29547899 | ||
Revision as of 18:39, 20 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 29547899 |
|---|---|
| End of the center position in the TSS region: | 29547900 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000143418.1 |
|---|---|
| Distance: | 9 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000143418.1:9 ENSMUST00000150739.1:18 AK018706:39 ENSMUST00000102844.3:40 BC002108:50 NM_001033865:-140 NM_024277:-140 BC081446:154 BC096392:154 ENSMUST00000102845.10:-209 |
TATA-Box annotation
| Distance to TSS: | -50 |
|---|---|
| Nearest PromoterID: | NM_028504 |
| Entrez ID: | 73324 |
| Nearest Unigene: | Mm.69388 |
| Nearest Refseq: | NM_028504 |
| Nearest Ensembl: | ENSMUSG00000020461 |
| Gene Name: | ribosomal protein S27A |
| Gene Alias: | 1700034F02Rik |
| Gene Description: | clathrin heavy chain linker domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
