Difference between revisions of "TSS:Mm 38141.1"
From referenceTSS
| Line 5: | Line 5: | ||
|FHCB1= | |FHCB1= | ||
|FHCB2= | |FHCB2= | ||
| − | |all_trans=BC021467:-6 BC066808:-10 BC067411:-10 AK159800:-10 AK167290:-16 AK029008:-28 AK148340:-28 NM_145554 | + | |all_trans=BC021467:-6 BC066808:-10 BC067411:-10 AK159800:-10 AK167290:-16 AK029008:-28 AK148340:-28 NM_145554:-67 ENSMUST00000037828.7:-87 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| Line 14: | Line 14: | ||
|entrez_id=100017 | |entrez_id=100017 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=AA691260 | + | |gene_alias=AA691260{{!}}ARH2{{!}}Arh{{!}}Arh1{{!}}FHCB1{{!}}FHCB2 |
|gene_description=low density lipoprotein receptor adaptor protein 1 | |gene_description=low density lipoprotein receptor adaptor protein 1 | ||
|gene_id=100017 | |gene_id=100017 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_145554 | |nearest_refseq=NM_145554 | ||
|nearest_unigene=Mm.27486 | |nearest_unigene=Mm.27486 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=134767924 | |start=134767924 | ||
Revision as of 04:33, 21 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 134767930 |
|---|---|
| End of the center position in the TSS region: | 134767931 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC021467 |
|---|---|
| Distance: | -6 |
| Num_trans: | 9 |
| All_trans: | BC021467:-6 BC066808:-10 BC067411:-10 AK159800:-10 AK167290:-16 AK029008:-28 AK148340:-28 NM_145554:-67 ENSMUST00000037828.7:-87 |
TATA-Box annotation
| Distance to TSS: | 73 |
|---|---|
| Nearest PromoterID: | NM_145554 |
| Entrez ID: | 100017 |
| Nearest Unigene: | Mm.27486 |
| Nearest Refseq: | NM_145554 |
| Nearest Ensembl: | ENSMUSG00000037295 |
| Gene Name: | low density lipoprotein receptor adaptor protein 1 |
| Gene Alias: | AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2 |
| Gene Description: | low density lipoprotein receptor adaptor protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
