Difference between revisions of "TSS:Mm 4499.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Pydc3= | |Pydc3= | ||
|Pyr-rv1= | |Pyr-rv1= | ||
| − | |all_trans=ENSMUST00000085876. | + | |all_trans=ENSMUST00000085876.11:-23 AK041099:-23 ENSMUST00000182880.1:-28 AK088880:-28 NM_001162938:-38 NM_001379481:-38 AK036671:201 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 12: | Line 12: | ||
|entrez_id=100033459 | |entrez_id=100033459 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=9830148g24rik | + | |gene_alias=9830148g24rik{{!}}E430029J22Rik{{!}}NG2creBAC{{!}}Pydc3{{!}}Pyr-rv1{{!}}Tg(Cspg4-cre)1Akik |
|gene_description=interferon activated gene 208 | |gene_description=interferon activated gene 208 | ||
|gene_id=100033459 | |gene_id=100033459 | ||
| − | |gene_name= | + | |gene_name=interferon activated gene 208 |
|gene_source=MGI:2442822 | |gene_source=MGI:2442822 | ||
| − | |gene_symbol= | + | |gene_symbol=Ifi208 |
| − | |gene_synonyms=E430029J22Rik | + | |gene_synonyms=E430029J22Rik Pydc3 Pyr-rv1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2442822 | |hgnc_mgi_id=MGI:2442822 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_001162938 | |nearest_refseq=NM_001162938 | ||
|nearest_unigene=Mm.303377 | |nearest_unigene=Mm.303377 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=173673702 | |start=173673702 | ||
|start_of_center_position=173673706 | |start_of_center_position=173673706 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000085876. | + | |transcript_name=ENSMUST00000085876.11 AK041099 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_4499.1 | |tss_id=mm_4499.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q3V3Q4 |
}} | }} | ||
Revision as of 07:11, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 173673706 |
|---|---|
| End of the center position in the TSS region: | 173673707 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000085876.11 AK041099 |
|---|---|
| Distance: | -23 |
| Num_trans: | 7 |
| All_trans: | ENSMUST00000085876.11:-23 AK041099:-23 ENSMUST00000182880.1:-28 AK088880:-28 NM_001162938:-38 NM_001379481:-38 AK036671:201 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_001162938 |
| Entrez ID: | 100033459 |
| Nearest Unigene: | Mm.303377 |
| Nearest Refseq: | NM_001162938 |
| Nearest Ensembl: | ENSMUSG00000066677 |
| Gene Name: | interferon activated gene 208 |
| Gene Alias: | 9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik |
| Gene Description: | interferon activated gene 208 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
