Difference between revisions of "TSS:Mm 50618.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Pals2= | |Pals2= | ||
| − | |all_trans=ENSMUST00000166318.7:0 ENSMUST00000036236.14:0 ENSMUST00000204545.2:0 ENSMUST00000203415.1:0 | + | |all_trans=ENSMUST00000166318.7:0 ENSMUST00000036236.14:0 ENSMUST00000204545.2:0 ENSMUST00000203415.1:0 NM_001164734:0 NM_001164733:0 NM_019939:0 AK144434:0 AF199009:0 AF199010:0 BC069908:0 AK164390:0 BC042868:0 BC046421:0 BC106140:0 AF161181:82 ENSMUST00000036225.14:88 BC145364:88 BC138666:88 BC145363:88 ENSMUST00000171601.7:112 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.2 | |cpg_percent=0.2 | ||
| Line 10: | Line 10: | ||
|entrez_id=56524 | |entrez_id=56524 | ||
|gc_percent=0.845771 | |gc_percent=0.845771 | ||
| − | |gene_alias=P55t | + | |gene_alias=P55t{{!}}Pals2 |
| − | |gene_description= | + | |gene_description=membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
|gene_id=56524 | |gene_id=56524 | ||
| − | |gene_name= | + | |gene_name=membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
|gene_source=MGI:1927340 | |gene_source=MGI:1927340 | ||
|gene_symbol=Mpp6 | |gene_symbol=Mpp6 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_008016 | |nearest_refseq=NM_008016 | ||
|nearest_unigene=Mm.41288 | |nearest_unigene=Mm.41288 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=mouse | |species=mouse | ||
|start=50110186 | |start=50110186 | ||
|start_of_center_position=50110240 | |start_of_center_position=50110240 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000166318.7 ENSMUST00000036236.14 ENSMUST00000204545.2 ENSMUST00000203415.1 NM_019939 | + | |transcript_name=ENSMUST00000166318.7 ENSMUST00000036236.14 ENSMUST00000204545.2 ENSMUST00000203415.1 NM_001164734 NM_001164733 NM_019939 AK144434 AF199009 AF199010 BC069908 AK164390 BC042868 BC046421 BC106140 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_50618.1 | |tss_id=mm_50618.1 | ||
Revision as of 09:21, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 50110240 |
|---|---|
| End of the center position in the TSS region: | 50110241 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000166318.7 ENSMUST00000036236.14 ENSMUST00000204545.2 ENSMUST00000203415.1 NM_001164734 NM_001164733 NM_019939 AK144434 AF199009 AF199010 BC069908 AK164390 BC042868 BC046421 BC106140 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENSMUST00000166318.7:0 ENSMUST00000036236.14:0 ENSMUST00000204545.2:0 ENSMUST00000203415.1:0 NM_001164734:0 NM_001164733:0 NM_019939:0 AK144434:0 AF199009:0 AF199010:0 BC069908:0 AK164390:0 BC042868:0 BC046421:0 BC106140:0 AF161181:82 ENSMUST00000036225.14:88 BC145364:88 BC138666:88 BC145363:88 ENSMUST00000171601.7:112 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_019939 |
| Entrez ID: | 56524 |
| Nearest Unigene: | Mm.41288 |
| Nearest Refseq: | NM_008016 |
| Nearest Ensembl: | ENSMUSG00000038388 |
| Gene Name: | membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
| Gene Alias: | P55t|Pals2 |
| Gene Description: | membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
| Gene Type: | protein-coding |
| CpG%: | 0.2 |
| GC%: | 0.845771 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
