Difference between revisions of "TSS:Mm 55316.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CRFR2beta= | |CRFR2beta= | ||
|Crfr2= | |Crfr2= | ||
| − | |all_trans=AK142261:0 U19939:0 U21729:0 ENSMUST00000003568.14:-41 ENSMUST00000166954.1 | + | |all_trans=ENSMUST00000212633.1:0 AK142261:0 U19939:0 U21729:0 ENSMUST00000003568.14:-41 ENSMUST00000166954.1:-43 NM_001288618:-43 NM_009953:-43 AK085854:-43 BC137592:60 ENSMUST00000164012.2:118 U17858:118 FJ548565:118 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 12: | Line 12: | ||
|entrez_id=12922 | |entrez_id=12922 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=CRF-R2 | + | |gene_alias=CRF-R2{{!}}CRFR2alpha{{!}}CRFR2beta{{!}}Crfr2 |
|gene_description=corticotropin releasing hormone receptor 2 | |gene_description=corticotropin releasing hormone receptor 2 | ||
|gene_id=12922 | |gene_id=12922 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_009953 | |nearest_refseq=NM_009953 | ||
|nearest_unigene=Mm.236081 | |nearest_unigene=Mm.236081 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=55132958 | |start=55132958 | ||
|start_of_center_position=55132965 | |start_of_center_position=55132965 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK142261 U19939 U21729 | + | |transcript_name=ENSMUST00000212633.1 AK142261 U19939 U21729 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_55316.1 | |tss_id=mm_55316.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A1D5RLK7 |
}} | }} | ||
Revision as of 11:08, 21 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 55132965 |
|---|---|
| End of the center position in the TSS region: | 55132966 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000212633.1 AK142261 U19939 U21729 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000212633.1:0 AK142261:0 U19939:0 U21729:0 ENSMUST00000003568.14:-41 ENSMUST00000166954.1:-43 NM_001288618:-43 NM_009953:-43 AK085854:-43 BC137592:60 ENSMUST00000164012.2:118 U17858:118 FJ548565:118 |
TATA-Box annotation
| Distance to TSS: | 50 |
|---|---|
| Nearest PromoterID: | NM_009953 |
| Entrez ID: | 12922 |
| Nearest Unigene: | Mm.236081 |
| Nearest Refseq: | NM_009953 |
| Nearest Ensembl: | ENSMUSG00000003476 |
| Gene Name: | corticotropin releasing hormone receptor 2 |
| Gene Alias: | CRF-R2|CRFR2alpha|CRFR2beta|Crfr2 |
| Gene Description: | corticotropin releasing hormone receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
