Difference between revisions of "TSS:Mm 64376.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|WP34= | |WP34= | ||
| − | |all_trans= | + | |all_trans=NM_001271509:-12 NM_001271510:-12 NM_001136071:-12 D49691:-12 LF196709:-13 MA432286:-13 ENSMUST00000018963.10:14 ENSMUST00000105968.7:-15 BC044736:25 ENSMUST00000105967.7:32 AK003081:32 M89956:38 S74179:67 LF296785:291 MA532362:291 LF296786:481 MA532363:481 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 10: | Line 10: | ||
|entrez_id=16985 | |entrez_id=16985 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=Lsp-1 | + | |gene_alias=Lsp-1{{!}}WP34{{!}}p50{{!}}pp52 |
|gene_description=lymphocyte specific 1 | |gene_description=lymphocyte specific 1 | ||
|gene_id=16985 | |gene_id=16985 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:96832 | |hgnc_mgi_id=MGI:96832 | ||
|nearest_ensembl=ENSMUSG00000018819 | |nearest_ensembl=ENSMUSG00000018819 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001271509 |
|nearest_refseq=NM_019391 | |nearest_refseq=NM_019391 | ||
|nearest_unigene=Mm.234003 | |nearest_unigene=Mm.234003 | ||
| − | |num_trans= | + | |num_trans=17 |
|p50= | |p50= | ||
|pp52= | |pp52= | ||
| Line 30: | Line 30: | ||
|start_of_center_position=142460827 | |start_of_center_position=142460827 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_001136071 | + | |transcript_name=NM_001271509 NM_001271510 NM_001136071 D49691 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_64376.1 | |tss_id=mm_64376.1 | ||
Revision as of 14:38, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 142460827 |
|---|---|
| End of the center position in the TSS region: | 142460828 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001271509 NM_001271510 NM_001136071 D49691 |
|---|---|
| Distance: | -12 |
| Num_trans: | 17 |
| All_trans: | NM_001271509:-12 NM_001271510:-12 NM_001136071:-12 D49691:-12 LF196709:-13 MA432286:-13 ENSMUST00000018963.10:14 ENSMUST00000105968.7:-15 BC044736:25 ENSMUST00000105967.7:32 AK003081:32 M89956:38 S74179:67 LF296785:291 MA532362:291 LF296786:481 MA532363:481 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001271509 |
| Entrez ID: | 16985 |
| Nearest Unigene: | Mm.234003 |
| Nearest Refseq: | NM_019391 |
| Nearest Ensembl: | ENSMUSG00000018819 |
| Gene Name: | lymphocyte specific 1 |
| Gene Alias: | Lsp-1|WP34|p50|pp52 |
| Gene Description: | lymphocyte specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
