Difference between revisions of "TSS:Mm 64380.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|WP34= | |WP34= | ||
| − | |all_trans=ENSMUST00000038946.8 | + | |all_trans=ENSMUST00000038946.8:66 NM_001271508:66 NM_019391:66 M90316:66 ENSMUST00000128986.7:95 AK031587:95 LF296797:168 MA532374:168 LF296796:-185 MA532373:-185 LF296795:-273 MA532372:-273 LF296798:289 MA532375:289 ENSMUST00000105966.1:374 BC003796:374 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 10: | Line 10: | ||
|entrez_id=16985 | |entrez_id=16985 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=Lsp-1 | + | |gene_alias=Lsp-1{{!}}WP34{{!}}p50{{!}}pp52 |
|gene_description=lymphocyte specific 1 | |gene_description=lymphocyte specific 1 | ||
|gene_id=16985 | |gene_id=16985 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_019391 | |nearest_refseq=NM_019391 | ||
|nearest_unigene=Mm.234003 | |nearest_unigene=Mm.234003 | ||
| − | |num_trans= | + | |num_trans=16 |
|p50= | |p50= | ||
|pp52= | |pp52= | ||
| Line 30: | Line 30: | ||
|start_of_center_position=142471767 | |start_of_center_position=142471767 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000038946.8 NM_019391 | + | |transcript_name=ENSMUST00000038946.8 NM_001271508 NM_019391 M90316 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_64380.1 | |tss_id=mm_64380.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P19973 |
}} | }} | ||
Revision as of 14:38, 21 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 142471767 |
|---|---|
| End of the center position in the TSS region: | 142471768 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000038946.8 NM_001271508 NM_019391 M90316 |
|---|---|
| Distance: | 66 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000038946.8:66 NM_001271508:66 NM_019391:66 M90316:66 ENSMUST00000128986.7:95 AK031587:95 LF296797:168 MA532374:168 LF296796:-185 MA532373:-185 LF296795:-273 MA532372:-273 LF296798:289 MA532375:289 ENSMUST00000105966.1:374 BC003796:374 |
TATA-Box annotation
| Distance to TSS: | -75 |
|---|---|
| Nearest PromoterID: | NM_001271508 |
| Entrez ID: | 16985 |
| Nearest Unigene: | Mm.234003 |
| Nearest Refseq: | NM_019391 |
| Nearest Ensembl: | ENSMUSG00000018819 |
| Gene Name: | lymphocyte specific 1 |
| Gene Alias: | Lsp-1|WP34|p50|pp52 |
| Gene Description: | lymphocyte specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
