Difference between revisions of "TSS:Mm 64381.1"
From referenceTSS
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|WP34= | |WP34= | ||
− | |all_trans=ENSMUST00000038946.8:0 ENSMUST00000128986.7:0 NM_019391:0 | + | |all_trans=ENSMUST00000038946.8:0 ENSMUST00000128986.7:0 NM_001271508:0 NM_019391:0 M90316:0 AK031587:0 LF296797:35 MA532374:35 LF296798:156 MA532375:156 ENSMUST00000105966.1:241 BC003796:241 LF296796:-265 MA532373:-265 LF296795:-353 MA532372:-353 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
Line 10: | Line 10: | ||
|entrez_id=16985 | |entrez_id=16985 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
− | |gene_alias=Lsp-1 | + | |gene_alias=Lsp-1{{!}}WP34{{!}}p50{{!}}pp52 |
|gene_description=lymphocyte specific 1 | |gene_description=lymphocyte specific 1 | ||
|gene_id=16985 | |gene_id=16985 | ||
Line 23: | Line 23: | ||
|nearest_refseq=NM_019391 | |nearest_refseq=NM_019391 | ||
|nearest_unigene=Mm.234003 | |nearest_unigene=Mm.234003 | ||
− | |num_trans= | + | |num_trans=16 |
|p50= | |p50= | ||
|pp52= | |pp52= | ||
Line 30: | Line 30: | ||
|start_of_center_position=142471874 | |start_of_center_position=142471874 | ||
|strand=+ | |strand=+ | ||
− | |transcript_name=ENSMUST00000038946.8 ENSMUST00000128986.7 NM_019391 | + | |transcript_name=ENSMUST00000038946.8 ENSMUST00000128986.7 NM_001271508 NM_019391 M90316 AK031587 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_64381.1 | |tss_id=mm_64381.1 | ||
|tss_score=1 | |tss_score=1 | ||
− | |uniprot_id= | + | |uniprot_id=P19973 |
}} | }} |
Revision as of 14:38, 21 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 142471874 |
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End of the center position in the TSS region: | 142471875 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENSMUST00000038946.8 ENSMUST00000128986.7 NM_001271508 NM_019391 M90316 AK031587 |
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Distance: | 0 |
Num_trans: | 16 |
All_trans: | ENSMUST00000038946.8:0 ENSMUST00000128986.7:0 NM_001271508:0 NM_019391:0 M90316:0 AK031587:0 LF296797:35 MA532374:35 LF296798:156 MA532375:156 ENSMUST00000105966.1:241 BC003796:241 LF296796:-265 MA532373:-265 LF296795:-353 MA532372:-353 |
TATA-Box annotation
Distance to TSS: | 31 |
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Nearest PromoterID: | NM_019391 |
Entrez ID: | 16985 |
Nearest Unigene: | Mm.234003 |
Nearest Refseq: | NM_019391 |
Nearest Ensembl: | ENSMUSG00000018819 |
Gene Name: | lymphocyte specific 1 |
Gene Alias: | Lsp-1|WP34|p50|pp52 |
Gene Description: | lymphocyte specific 1 |
Gene Type: | protein-coding |
CpG%: | 0.02 |
GC%: | 0.646766 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |