Difference between revisions of "TSS:Mm 64382.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|WP34= | |WP34= | ||
| − | |all_trans=ENSMUST00000105966.1:58 BC003796:58 ENSMUST00000128986.7:-209 AK031587:-209 ENSMUST00000038946.8 | + | |all_trans=LF296798:-15 MA532375:-15 ENSMUST00000105966.1:58 BC003796:58 LF296797:-136 MA532374:-136 ENSMUST00000128986.7:-209 AK031587:-209 ENSMUST00000038946.8:-238 NM_001271508:-238 NM_019391:-238 M90316:-238 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=-15 |
|distance_to_tss=244 | |distance_to_tss=244 | ||
|end=142472093 | |end=142472093 | ||
| Line 10: | Line 10: | ||
|entrez_id=16985 | |entrez_id=16985 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=Lsp-1 | + | |gene_alias=Lsp-1{{!}}WP34{{!}}p50{{!}}pp52 |
|gene_description=lymphocyte specific 1 | |gene_description=lymphocyte specific 1 | ||
|gene_id=16985 | |gene_id=16985 | ||
| − | |gene_name= | + | |gene_name=Lsp1 |
|gene_source=MGI:96832 | |gene_source=MGI:96832 | ||
|gene_symbol=Lsp1 | |gene_symbol=Lsp1 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_019391 | |nearest_refseq=NM_019391 | ||
|nearest_unigene=Mm.234003 | |nearest_unigene=Mm.234003 | ||
| − | |num_trans= | + | |num_trans=12 |
|p50= | |p50= | ||
|pp52= | |pp52= | ||
| Line 30: | Line 30: | ||
|start_of_center_position=142472086 | |start_of_center_position=142472086 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF296798 MA532375 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_64382.1 | |tss_id=mm_64382.1 | ||
Revision as of 14:38, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 142472086 |
|---|---|
| End of the center position in the TSS region: | 142472087 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF296798 MA532375 |
|---|---|
| Distance: | -15 |
| Num_trans: | 12 |
| All_trans: | LF296798:-15 MA532375:-15 ENSMUST00000105966.1:58 BC003796:58 LF296797:-136 MA532374:-136 ENSMUST00000128986.7:-209 AK031587:-209 ENSMUST00000038946.8:-238 NM_001271508:-238 NM_019391:-238 M90316:-238 |
TATA-Box annotation
| Distance to TSS: | 244 |
|---|---|
| Nearest PromoterID: | NM_019391 |
| Entrez ID: | 16985 |
| Nearest Unigene: | Mm.234003 |
| Nearest Refseq: | NM_019391 |
| Nearest Ensembl: | ENSMUSG00000018819 |
| Gene Name: | Lsp1 |
| Gene Alias: | Lsp-1|WP34|p50|pp52 |
| Gene Description: | lymphocyte specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
