Difference between revisions of "TSS:Mm 64387.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|WP34= | |WP34= | ||
| − | |all_trans=ENSMUST00000149521.7:-35 NM_001271523:-35 | + | |all_trans=ENSMUST00000149521.7:-35 NM_001271523:-35 AK075783:-35 LF296800:-227 MA532377:-227 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 10: | Line 10: | ||
|entrez_id=16985 | |entrez_id=16985 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=Lsp-1 | + | |gene_alias=Lsp-1{{!}}WP34{{!}}p50{{!}}pp52 |
|gene_description=lymphocyte specific 1 | |gene_description=lymphocyte specific 1 | ||
|gene_id=16985 | |gene_id=16985 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_019391 | |nearest_refseq=NM_019391 | ||
|nearest_unigene=Mm.234003 | |nearest_unigene=Mm.234003 | ||
| − | |num_trans= | + | |num_trans=5 |
|p50= | |p50= | ||
|pp52= | |pp52= | ||
| Line 30: | Line 30: | ||
|start_of_center_position=142477052 | |start_of_center_position=142477052 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000149521.7 NM_001271523 | + | |transcript_name=ENSMUST00000149521.7 NM_001271523 AK075783 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_64387.1 | |tss_id=mm_64387.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A1B0GRF5 |
}} | }} | ||
Revision as of 14:38, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 142477052 |
|---|---|
| End of the center position in the TSS region: | 142477053 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000149521.7 NM_001271523 AK075783 |
|---|---|
| Distance: | -35 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000149521.7:-35 NM_001271523:-35 AK075783:-35 LF296800:-227 MA532377:-227 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NM_001271523 |
| Entrez ID: | 16985 |
| Nearest Unigene: | Mm.234003 |
| Nearest Refseq: | NM_019391 |
| Nearest Ensembl: | ENSMUSG00000018819 |
| Gene Name: | lymphocyte specific 1 |
| Gene Alias: | Lsp-1|WP34|p50|pp52 |
| Gene Description: | lymphocyte specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
