Personal tools

Difference between revisions of "TSS:Mm 64389.1"

From referenceTSS

Jump to: navigation, search
Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000126149.7:167
+
|all_trans=ENSMUST00000126149.7:167 LF296804:318 MA532381:318 LF296803:-373 MA532380:-373
 
|chr=chr7
 
|chr=chr7
 
|cpg_percent=0.015
 
|cpg_percent=0.015
Line 10: Line 10:
 
|gc_percent=0.587065
 
|gc_percent=0.587065
 
|gene_alias=fTnT
 
|gene_alias=fTnT
|gene_description="troponin T3, skeletal, fast"
+
|gene_description=troponin T3, skeletal, fast
 
|gene_id=16985
 
|gene_id=16985
 
|gene_name=lymphocyte specific 1
 
|gene_name=lymphocyte specific 1
Line 19: Line 19:
 
|hgnc_mgi_id=MGI:96832
 
|hgnc_mgi_id=MGI:96832
 
|nearest_ensembl=ENSMUSG00000061723
 
|nearest_ensembl=ENSMUSG00000061723
|nearest_promoter_id=NM_001347549
+
|nearest_promoter_id=NM_001347552
 
|nearest_refseq=NM_011620
 
|nearest_refseq=NM_011620
 
|nearest_unigene=Mm.389992
 
|nearest_unigene=Mm.389992
|num_trans=1
+
|num_trans=5
 
|species=mouse
 
|species=mouse
 
|start=142488834
 
|start=142488834

Revision as of 14:38, 21 June 2021

Basic information about the TSS


TSS ID:mm_64389.1
Species:mouse
Chr:chr7
TSS Classification:no
Start:142488834
End:142488850
Strand:+
TSS Score:1
Start of the center position in the TSS region:142488842
End of the center position in the TSS region:142488843



Gene and protein annotation


Transcript_name:ENSMUST00000126149.7
Distance:167
GeneID:16985
HGNC/MGI_ID:MGI:96832
UniProt_ID:
Gene_name:lymphocyte specific 1
Gene_symbol:Lsp1
Gene_synonyms:Lsp-1 WP34 leukocyte-specific_protein_1 leukocyte_specific_protein_1 lymphocyte-specific_protein_1 p50 pp52
Gene_source:MGI:96832



Transcript annotation


Transcript_name:ENSMUST00000126149.7
Distance:167
Num_trans:5
All_trans:ENSMUST00000126149.7:167 LF296804:318 MA532381:318 LF296803:-373 MA532380:-373



TATA-Box annotation


Distance to TSS:-9994
Nearest PromoterID:NM_001347552
Entrez ID:21957
Nearest Unigene:Mm.389992
Nearest Refseq:NM_011620
Nearest Ensembl:ENSMUSG00000061723
Gene Name:lymphocyte specific 1
Gene Alias:fTnT
Gene Description:troponin T3, skeletal, fast
Gene Type:protein-coding
CpG%:0.015
GC%:0.587065
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):