Difference between revisions of "TSS:Mm 64394.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000126149.7:-385 ENSMUST00000142408.1:398 | + | |all_trans=LF296804:-234 MA532381:-234 ENSMUST00000126149.7:-385 ENSMUST00000142408.1:398 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance=- | + | |distance=-234 |
|distance_to_tss=-9428 | |distance_to_tss=-9428 | ||
|end=142489415 | |end=142489415 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
|gene_alias=fTnT | |gene_alias=fTnT | ||
| − | |gene_description= | + | |gene_description=troponin T3, skeletal, fast |
|gene_id=16985 | |gene_id=16985 | ||
| − | |gene_name= | + | |gene_name=Tnnt3 |
|gene_source=MGI:96832 | |gene_source=MGI:96832 | ||
|gene_symbol=Lsp1 | |gene_symbol=Lsp1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:96832 | |hgnc_mgi_id=MGI:96832 | ||
|nearest_ensembl=ENSMUSG00000061723 | |nearest_ensembl=ENSMUSG00000061723 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001347552 |
|nearest_refseq=NM_011620 | |nearest_refseq=NM_011620 | ||
|nearest_unigene=Mm.389992 | |nearest_unigene=Mm.389992 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=142489401 | |start=142489401 | ||
|start_of_center_position=142489408 | |start_of_center_position=142489408 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF296804 MA532381 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_64394.1 | |tss_id=mm_64394.1 | ||
Latest revision as of 14:38, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 142489408 |
|---|---|
| End of the center position in the TSS region: | 142489409 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF296804 MA532381 |
|---|---|
| Distance: | -234 |
| Num_trans: | 4 |
| All_trans: | LF296804:-234 MA532381:-234 ENSMUST00000126149.7:-385 ENSMUST00000142408.1:398 |
TATA-Box annotation
| Distance to TSS: | -9428 |
|---|---|
| Nearest PromoterID: | NM_001347552 |
| Entrez ID: | 21957 |
| Nearest Unigene: | Mm.389992 |
| Nearest Refseq: | NM_011620 |
| Nearest Ensembl: | ENSMUSG00000061723 |
| Gene Name: | Tnnt3 |
| Gene Alias: | fTnT |
| Gene Description: | troponin T3, skeletal, fast |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
