Difference between revisions of "TSS:Mm 78333.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|E430034N22= | |E430034N22= | ||
| − | |all_trans=AK220447:-245 AK088997:-258 AK144127:-258 AK147986:-262 AK141572:-263 BC058587:-276 | + | |all_trans=NM_001359738:-19 ENSMUST00000217598.1:-245 AK220447:-245 AK088997:-258 AK144127:-258 ENSMUST00000213980.1:-262 AK147986:-262 ENSMUST00000215721.1:-263 AK141572:-263 BC058587:-276 ENSMUST00000215692.1:-335 ENSMUST00000165594.3:-460 ENSMUST00000115272.8:-472 NM_001205367:-472 NM_009859:-472 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance=- | + | |distance=-19 |
| − | |distance_to_tss= | + | |distance_to_tss=28 |
|end=25252930 | |end=25252930 | ||
|end_of_center_position=25252921 | |end_of_center_position=25252921 | ||
|entrez_id=235072 | |entrez_id=235072 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=Cdc10 | + | |gene_alias=Cdc10{{!}}E430034N22 |
|gene_description=septin 7 | |gene_description=septin 7 | ||
|gene_id=235072 | |gene_id=235072 | ||
|gene_name=septin 7 | |gene_name=septin 7 | ||
|gene_source=MGI:1335094 | |gene_source=MGI:1335094 | ||
| − | |gene_symbol= | + | |gene_symbol=Septin7 |
| − | |gene_synonyms=Cdc10 | + | |gene_synonyms=Cdc10 Sept7 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1335094 | |hgnc_mgi_id=MGI:1335094 | ||
|nearest_ensembl=ENSMUSG00000001833 | |nearest_ensembl=ENSMUSG00000001833 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359738 |
|nearest_refseq=NM_009859 | |nearest_refseq=NM_009859 | ||
|nearest_unigene=Mm.270259 | |nearest_unigene=Mm.270259 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=mouse | |species=mouse | ||
|start=25252910 | |start=25252910 | ||
|start_of_center_position=25252920 | |start_of_center_position=25252920 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001359738 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_78333.1 | |tss_id=mm_78333.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 19:56, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25252920 |
|---|---|
| End of the center position in the TSS region: | 25252921 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001359738 |
|---|---|
| Distance: | -19 |
| Num_trans: | 15 |
| All_trans: | NM_001359738:-19 ENSMUST00000217598.1:-245 AK220447:-245 AK088997:-258 AK144127:-258 ENSMUST00000213980.1:-262 AK147986:-262 ENSMUST00000215721.1:-263 AK141572:-263 BC058587:-276 ENSMUST00000215692.1:-335 ENSMUST00000165594.3:-460 ENSMUST00000115272.8:-472 NM_001205367:-472 NM_009859:-472 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001359738 |
| Entrez ID: | 235072 |
| Nearest Unigene: | Mm.270259 |
| Nearest Refseq: | NM_009859 |
| Nearest Ensembl: | ENSMUSG00000001833 |
| Gene Name: | septin 7 |
| Gene Alias: | Cdc10|E430034N22 |
| Gene Description: | septin 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
