Difference between revisions of "TSS:Mm 83316.1"
From referenceTSS
| Line 4: | Line 4: | ||
|CD149= | |CD149= | ||
|Muc18= | |Muc18= | ||
| − | |all_trans=ENSMUST00000180670. | + | |all_trans=ENSMUST00000180670.2:29 NR_152189:29 AK143007:29 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=29 | |distance=29 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-38 |
|end=44134533 | |end=44134533 | ||
|end_of_center_position=44134524 | |end_of_center_position=44134524 | ||
| − | |entrez_id= | + | |entrez_id=100038560 |
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=predicted gene 10687 |
|gene_id=100038560 | |gene_id=100038560 | ||
|gene_name=predicted gene 10687 | |gene_name=predicted gene 10687 | ||
| Line 20: | Line 20: | ||
|gene_symbol=Gm10687 | |gene_symbol=Gm10687 | ||
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=MGI:3642689 | |hgnc_mgi_id=MGI:3642689 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_152189 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_152189 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.429758 |
| − | |num_trans= | + | |num_trans=3 |
|s-endo= | |s-endo= | ||
|s-gicerin= | |s-gicerin= | ||
| Line 33: | Line 33: | ||
|start_of_center_position=44134523 | |start_of_center_position=44134523 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000180670. | + | |transcript_name=ENSMUST00000180670.2 NR_152189 AK143007 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_83316.1 | |tss_id=mm_83316.1 | ||
Revision as of 21:47, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 44134523 |
|---|---|
| End of the center position in the TSS region: | 44134524 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000180670.2 NR_152189 AK143007 |
|---|---|
| Distance: | 29 |
| Num_trans: | 3 |
| All_trans: | ENSMUST00000180670.2:29 NR_152189:29 AK143007:29 |
TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NR_152189 |
| Entrez ID: | 100038560 |
| Nearest Unigene: | Mm.429758 |
| Nearest Refseq: | NR_152189 |
| Nearest Ensembl: | |
| Gene Name: | predicted gene 10687 |
| Gene Alias: | - |
| Gene Description: | predicted gene 10687 |
| Gene Type: | ncRNA |
| CpG%: | 0.095 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
