Difference between revisions of "TSS:Mm 89080.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|C430041I18Rik= | |C430041I18Rik= | ||
| − | |all_trans=ENSMUST00000020488. | + | |all_trans=ENSMUST00000020488.8:0 NM_026579:0 AK128995:0 AK049544:0 AK160350:0 AK147063:0 AK162255:0 AK020067:0 AB336210:0 AB336211:0 BC050904:0 BC094241:0 BC035946:0 AK201856:21 AB336212:27 AB336213:83 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| Line 10: | Line 10: | ||
|entrez_id=28109 | |entrez_id=28109 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=AI747614 | + | |gene_alias=AI747614{{!}}C430041I18Rik |
| − | |gene_description= | + | |gene_description=DNA segment, Chr 10, Wayne State University 102, expressed |
|gene_id=28109 | |gene_id=28109 | ||
| − | |gene_name= | + | |gene_name=NOP protein chaperone 1 |
|gene_source=MGI:106381 | |gene_source=MGI:106381 | ||
| − | |gene_symbol= | + | |gene_symbol=Nopchap1 |
| − | |gene_synonyms=C430041I18Rik | + | |gene_synonyms=C430041I18Rik D10Wsu102e |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:106381 | |hgnc_mgi_id=MGI:106381 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_026579 | |nearest_refseq=NM_026579 | ||
|nearest_unigene=Mm.196210 | |nearest_unigene=Mm.196210 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=mouse | |species=mouse | ||
|start=83360206 | |start=83360206 | ||
|start_of_center_position=83360235 | |start_of_center_position=83360235 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000020488. | + | |transcript_name=ENSMUST00000020488.8 NM_026579 AK128995 AK049544 AK160350 AK147063 AK162255 AK020067 AB336210 AB336211 BC050904 BC094241 BC035946 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_89080.1 | |tss_id=mm_89080.1 | ||
Revision as of 23:57, 21 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 83360235 |
|---|---|
| End of the center position in the TSS region: | 83360236 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000020488.8 NM_026579 AK128995 AK049544 AK160350 AK147063 AK162255 AK020067 AB336210 AB336211 BC050904 BC094241 BC035946 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000020488.8:0 NM_026579:0 AK128995:0 AK049544:0 AK160350:0 AK147063:0 AK162255:0 AK020067:0 AB336210:0 AB336211:0 BC050904:0 BC094241:0 BC035946:0 AK201856:21 AB336212:27 AB336213:83 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NM_026579 |
| Entrez ID: | 28109 |
| Nearest Unigene: | Mm.196210 |
| Nearest Refseq: | NM_026579 |
| Nearest Ensembl: | ENSMUSG00000020255 |
| Gene Name: | NOP protein chaperone 1 |
| Gene Alias: | AI747614|C430041I18Rik |
| Gene Description: | DNA segment, Chr 10, Wayne State University 102, expressed |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
