Difference between revisions of "TSS:Mm 9923.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Lek1= | |Lek1= | ||
|PRO1779= | |PRO1779= | ||
| − | |all_trans=ENSMUST00000165663.1:10 AK080758:-13 ENSMUST00000171929.7:-27 ENSMUST00000165962.1:-27 ENSMUST00000194165.1:-27 NM_001081363 | + | |all_trans=ENSMUST00000165663.1:10 AK080758:-13 ENSMUST00000171929.7:-27 ENSMUST00000165962.1:-27 ENSMUST00000194165.1:-27 NM_001081363:-27 AK029517:-27 AK165236:-27 AK143730:-27 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 13: | Line 13: | ||
|entrez_id=108000 | |entrez_id=108000 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=6530404A22Rik | + | |gene_alias=6530404A22Rik{{!}}AI325968{{!}}CENF{{!}}Lek1{{!}}PRO1779{{!}}mitosin |
|gene_description=centromere protein F | |gene_description=centromere protein F | ||
|gene_id=108000 | |gene_id=108000 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_001081363 | |nearest_refseq=NM_001081363 | ||
|nearest_unigene=Mm.129746 | |nearest_unigene=Mm.129746 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=189688044 | |start=189688044 | ||
Revision as of 03:47, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 189688051 |
|---|---|
| End of the center position in the TSS region: | 189688052 |
Gene and protein annotation
|
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Transcript annotation
| Transcript_name: | ENSMUST00000165663.1 |
|---|---|
| Distance: | 10 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000165663.1:10 AK080758:-13 ENSMUST00000171929.7:-27 ENSMUST00000165962.1:-27 ENSMUST00000194165.1:-27 NM_001081363:-27 AK029517:-27 AK165236:-27 AK143730:-27 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_001081363 |
| Entrez ID: | 108000 |
| Nearest Unigene: | Mm.129746 |
| Nearest Refseq: | NM_001081363 |
| Nearest Ensembl: | ENSMUSG00000026605 |
| Gene Name: | centromere protein F |
| Gene Alias: | 6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin |
| Gene Description: | centromere protein F |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
