Difference between revisions of "TSS:Mm 99455.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
− | |all_trans=AK182648:-11 ENSMUST00000123500.2:247 AK211032:-256 AK219696:-267 AK193719:-286 ENSMUST00000138451.1:-343 ENSMUST00000176953.1:-346 | + | |all_trans=AK182648:-11 ENSMUST00000123500.2:247 AK211032:-256 LF230896:262 MA466473:262 AK219696:-267 AK193719:-286 ENSMUST00000138451.1:-343 ENSMUST00000176953.1:-346 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=-11 | |distance=-11 | ||
− | |distance_to_tss= | + | |distance_to_tss=3951 |
|end=102434471 | |end=102434471 | ||
|end_of_center_position=102434458 | |end_of_center_position=102434458 | ||
Line 10: | Line 10: | ||
|epithelin= | |epithelin= | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
− | |gene_alias=Pgrn | + | |gene_alias=GP88{{!}}PCDGF{{!}}PEPI{{!}}Pgrn{{!}}epithelin |
|gene_description=granulin | |gene_description=granulin | ||
|gene_id=14824 | |gene_id=14824 | ||
Line 23: | Line 23: | ||
|nearest_refseq=NM_008175 | |nearest_refseq=NM_008175 | ||
|nearest_unigene=Mm.1568 | |nearest_unigene=Mm.1568 | ||
− | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=102434444 | |start=102434444 | ||
|start_of_center_position=102434457 | |start_of_center_position=102434457 | ||
|strand=+ | |strand=+ | ||
− | |tata_box= | + | |tata_box=78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00) |
|transcript_name=AK182648 | |transcript_name=AK182648 | ||
|tss_classification=yes | |tss_classification=yes |
Revision as of 03:51, 22 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 102434457 |
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End of the center position in the TSS region: | 102434458 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | AK182648 |
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Distance: | -11 |
Num_trans: | 9 |
All_trans: | AK182648:-11 ENSMUST00000123500.2:247 AK211032:-256 LF230896:262 MA466473:262 AK219696:-267 AK193719:-286 ENSMUST00000138451.1:-343 ENSMUST00000176953.1:-346 |
TATA-Box annotation
Distance to TSS: | 3951 |
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Nearest PromoterID: | NM_008175 |
Entrez ID: | 14824 |
Nearest Unigene: | Mm.1568 |
Nearest Refseq: | NM_008175 |
Nearest Ensembl: | ENSMUSG00000034708 |
Gene Name: | granulin |
Gene Alias: | GP88|PCDGF|PEPI|Pgrn|epithelin |
Gene Description: | granulin |
Gene Type: | protein-coding |
CpG%: | 0.01 |
GC%: | 0.512438 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00) |