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Difference between revisions of "TSS:Mm 99455.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
|all_trans=AK182648:-11 ENSMUST00000123500.2:247 AK211032:-256 AK219696:-267 AK193719:-286 ENSMUST00000138451.1:-343 ENSMUST00000176953.1:-346
+
|all_trans=AK182648:-11 ENSMUST00000123500.2:247 AK211032:-256 LF230896:262 MA466473:262 AK219696:-267 AK193719:-286 ENSMUST00000138451.1:-343 ENSMUST00000176953.1:-346
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.01
 
|cpg_percent=0.01
 
|distance=-11
 
|distance=-11
|distance_to_tss=4136
+
|distance_to_tss=3951
 
|end=102434471
 
|end=102434471
 
|end_of_center_position=102434458
 
|end_of_center_position=102434458
Line 10: Line 10:
 
|epithelin=
 
|epithelin=
 
|gc_percent=0.512438
 
|gc_percent=0.512438
|gene_alias=Pgrn
+
|gene_alias=GP88{{!}}PCDGF{{!}}PEPI{{!}}Pgrn{{!}}epithelin
 
|gene_description=granulin
 
|gene_description=granulin
 
|gene_id=14824
 
|gene_id=14824
Line 23: Line 23:
 
|nearest_refseq=NM_008175
 
|nearest_refseq=NM_008175
 
|nearest_unigene=Mm.1568
 
|nearest_unigene=Mm.1568
|num_trans=7
+
|num_trans=9
 
|species=mouse
 
|species=mouse
 
|start=102434444
 
|start=102434444
 
|start_of_center_position=102434457
 
|start_of_center_position=102434457
 
|strand=+
 
|strand=+
|tata_box="78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00)"
+
|tata_box=78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00)
 
|transcript_name=AK182648
 
|transcript_name=AK182648
 
|tss_classification=yes
 
|tss_classification=yes

Revision as of 03:51, 22 June 2021

Basic information about the TSS


TSS ID:mm_99455.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102434444
End:102434471
Strand:+
TSS Score:1
Start of the center position in the TSS region:102434457
End of the center position in the TSS region:102434458



Gene and protein annotation


Transcript_name:AK182648
Distance:-11
GeneID:14824
HGNC/MGI_ID:MGI:95832
UniProt_ID:
Gene_name:granulin
Gene_symbol:Grn
Gene_synonyms:PC_cell-derived_growth_factor Pgrn acrogranulin epithelin progranulin
Gene_source:MGI:95832



Transcript annotation


Transcript_name:AK182648
Distance:-11
Num_trans:9
All_trans:AK182648:-11 ENSMUST00000123500.2:247 AK211032:-256 LF230896:262 MA466473:262 AK219696:-267 AK193719:-286 ENSMUST00000138451.1:-343 ENSMUST00000176953.1:-346



TATA-Box annotation


Distance to TSS:3951
Nearest PromoterID:NM_008175
Entrez ID:14824
Nearest Unigene:Mm.1568
Nearest Refseq:NM_008175
Nearest Ensembl:ENSMUSG00000034708
Gene Name:granulin
Gene Alias:GP88|PCDGF|PEPI|Pgrn|epithelin
Gene Description:granulin
Gene Type:protein-coding
CpG%:0.01
GC%:0.512438
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00)