Difference between revisions of "TSS:Mm 99472.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK217383:186 AK185467:-308 AK201430:310 AK213315:310 | + | |all_trans=LF230900:42 MA466477:42 LF230901:176 MA466478:176 AK217383:186 AK185467:-308 AK201430:310 AK213315:310 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=42 |
| − | |distance_to_tss= | + | |distance_to_tss=5868 |
|end=102436380 | |end=102436380 | ||
|end_of_center_position=102436375 | |end_of_center_position=102436375 | ||
| Line 10: | Line 10: | ||
|epithelin= | |epithelin= | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=Pgrn | + | |gene_alias=GP88{{!}}PCDGF{{!}}PEPI{{!}}Pgrn{{!}}epithelin |
|gene_description=granulin | |gene_description=granulin | ||
|gene_id=14824 | |gene_id=14824 | ||
| − | |gene_name= | + | |gene_name=Grn |
|gene_source=MGI:95832 | |gene_source=MGI:95832 | ||
|gene_symbol=Grn | |gene_symbol=Grn | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_008175 | |nearest_refseq=NM_008175 | ||
|nearest_unigene=Mm.1568 | |nearest_unigene=Mm.1568 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=102436369 | |start=102436369 | ||
|start_of_center_position=102436374 | |start_of_center_position=102436374 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF230900 MA466477 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99472.1 | |tss_id=mm_99472.1 | ||
Latest revision as of 03:52, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102436374 |
|---|---|
| End of the center position in the TSS region: | 102436375 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF230900 MA466477 |
|---|---|
| Distance: | 42 |
| Num_trans: | 8 |
| All_trans: | LF230900:42 MA466477:42 LF230901:176 MA466478:176 AK217383:186 AK185467:-308 AK201430:310 AK213315:310 |
TATA-Box annotation
| Distance to TSS: | 5868 |
|---|---|
| Nearest PromoterID: | NM_008175 |
| Entrez ID: | 14824 |
| Nearest Unigene: | Mm.1568 |
| Nearest Refseq: | NM_008175 |
| Nearest Ensembl: | ENSMUSG00000034708 |
| Gene Name: | Grn |
| Gene Alias: | GP88|PCDGF|PEPI|Pgrn|epithelin |
| Gene Description: | granulin |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
