Difference between revisions of "TSS:Mm 99493.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000107073.7:-57 ENSMUST00000021302.14:337 NM_080846 | + | |all_trans=ENSMUST00000107073.7:-57 NM_001357580:-57 ENSMUST00000021302.14:337 NM_080846:337 BC005568:337 ENSMUST00000107072.1:487 AK009942:499 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-57 | |distance=-57 | ||
| − | |distance_to_tss= | + | |distance_to_tss=83 |
|end=102835959 | |end=102835959 | ||
|end_of_center_position=102835933 | |end_of_center_position=102835933 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=2310056K19Rik | |gene_alias=2310056K19Rik | ||
| − | |gene_description= | + | |gene_description=HIG1 domain family, member 1B |
|gene_id=75689 | |gene_id=75689 | ||
| − | |gene_name= | + | |gene_name=HIG1 domain family, member 1B |
|gene_source=MGI:1922939 | |gene_source=MGI:1922939 | ||
|gene_symbol=Higd1b | |gene_symbol=Higd1b | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1922939 | |hgnc_mgi_id=MGI:1922939 | ||
|nearest_ensembl=ENSMUSG00000020928 | |nearest_ensembl=ENSMUSG00000020928 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001357580 |
|nearest_refseq=NM_080846 | |nearest_refseq=NM_080846 | ||
|nearest_unigene=Mm.44408 | |nearest_unigene=Mm.44408 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=102835932 | |start_of_center_position=102835932 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000107073.7 | + | |transcript_name=ENSMUST00000107073.7 NM_001357580 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_99493.1 | |tss_id=mm_99493.1 | ||
Revision as of 03:52, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102835932 |
|---|---|
| End of the center position in the TSS region: | 102835933 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000107073.7 NM_001357580 |
|---|---|
| Distance: | -57 |
| Num_trans: | 7 |
| All_trans: | ENSMUST00000107073.7:-57 NM_001357580:-57 ENSMUST00000021302.14:337 NM_080846:337 BC005568:337 ENSMUST00000107072.1:487 AK009942:499 |
TATA-Box annotation
| Distance to TSS: | 83 |
|---|---|
| Nearest PromoterID: | NM_001357580 |
| Entrez ID: | 75689 |
| Nearest Unigene: | Mm.44408 |
| Nearest Refseq: | NM_080846 |
| Nearest Ensembl: | ENSMUSG00000020928 |
| Gene Name: | HIG1 domain family, member 1B |
| Gene Alias: | 2310056K19Rik |
| Gene Description: | HIG1 domain family, member 1B |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
