Difference between revisions of "TSS:Mm 99606.1"
From referenceTSS
| Line 2: | Line 2: | ||
|OTTMUSG00000003182= | |OTTMUSG00000003182= | ||
|OTTMUSG00000003183= | |OTTMUSG00000003183= | ||
| − | |all_trans=ENSMUST00000130588.7:0 ENSMUST00000106957.7:-19 ENSMUST00000106956.9:259 | + | |all_trans=ENSMUST00000130588.7:0 ENSMUST00000106957.7:-19 NM_001355754:-19 ENSMUST00000106956.9:259 NM_001355755:259 AK013098:353 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=28 |
|end=104577022 | |end=104577022 | ||
|end_of_center_position=104577013 | |end_of_center_position=104577013 | ||
| − | |entrez_id= | + | |entrez_id=17896 |
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias= | + | |gene_alias=ALC1{{!}}AMLC{{!}}ELC{{!}}ELC1a{{!}}GT1{{!}}MLC1EMB{{!}}MLC1a{{!}}Myla |
| − | |gene_description= | + | |gene_description=myosin, light polypeptide 4 |
|gene_id=17896 | |gene_id=17896 | ||
| − | |gene_name= | + | |gene_name=myosin, light polypeptide 4 |
|gene_source=MGI:97267 | |gene_source=MGI:97267 | ||
|gene_symbol=Myl4 | |gene_symbol=Myl4 | ||
|gene_synonyms=ELC ELC1a MLC1a Myla | |gene_synonyms=ELC ELC1a MLC1a Myla | ||
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id=MGI:97267 | |hgnc_mgi_id=MGI:97267 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000061086 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001355754 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_010858 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.390355 |
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=104577003 | |start=104577003 | ||
|start_of_center_position=104577012 | |start_of_center_position=104577012 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-75(TGGTATAAAAGG,-,0.00) |
|transcript_name=ENSMUST00000130588.7 | |transcript_name=ENSMUST00000130588.7 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 03:55, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 104577012 |
|---|---|
| End of the center position in the TSS region: | 104577013 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000130588.7 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENSMUST00000130588.7:0 ENSMUST00000106957.7:-19 NM_001355754:-19 ENSMUST00000106956.9:259 NM_001355755:259 AK013098:353 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001355754 |
| Entrez ID: | 17896 |
| Nearest Unigene: | Mm.390355 |
| Nearest Refseq: | NM_010858 |
| Nearest Ensembl: | ENSMUSG00000061086 |
| Gene Name: | myosin, light polypeptide 4 |
| Gene Alias: | ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla |
| Gene Description: | myosin, light polypeptide 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -75(TGGTATAAAAGG,-,0.00) |
