Difference between revisions of "TSS:Hg 232303.1"
From referenceTSS
| Line 7: | Line 7: | ||
|distance=70 | |distance=70 | ||
|distance_to_tss=32 | |distance_to_tss=32 | ||
| − | |end= | + | |end=49366 |
|end_of_center_position=49366 | |end_of_center_position=49366 | ||
|entrez_id=143162 | |entrez_id=143162 | ||
| Line 26: | Line 26: | ||
|num_trans=11 | |num_trans=11 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=49365 |
|start_of_center_position=49365 | |start_of_center_position=49365 | ||
|strand=- | |strand=- | ||
|tata_box=-62(GCTTTTATATCC,+,0.00) | |tata_box=-62(GCTTTTATATCC,+,0.00) | ||
|transcript_name=ENST00000568584.6 NM_177987 | |transcript_name=ENST00000568584.6 NM_177987 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232303.1 | |tss_id=hg_232303.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q3ZCM7 | |uniprot_id=Q3ZCM7 | ||
}} | }} | ||
Revision as of 08:34, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49365 |
|---|---|
| End of the center position in the TSS region: | 49366 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000568584.6 NM_177987 |
|---|---|
| Distance: | 70 |
| Num_trans: | 11 |
| All_trans: | ENST00000568584.6:70 NM_177987:70 ENST00000561967.1:73 ENST00000568866.5:89 ENST00000562809.1:97 ENST00000563456.1:97 BC156319:126 BC157066:126 BC101271:135 BC101270:135 ENST00000567466.1:-155 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001042512 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | tubulin beta 8 class VIII |
| Gene Alias: | PDZD5C|PDZK4|PDZK5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -62(GCTTTTATATCC,+,0.00) |
