Difference between revisions of "TSS:Hg 233568.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000439373.3:0 NM_001136107:0 LP895729:42 BC157860:88 BC171858:88 | |all_trans=ENST00000439373.3:0 NM_001136107:0 LP895729:42 BC157860:88 BC171858:88 | ||
| − | |chr= | + | |chr=chr1 |
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-4601 | |distance_to_tss=-4601 | ||
| − | |end= | + | |end=170145959 |
|end_of_center_position=170145959 | |end_of_center_position=170145959 | ||
|entrez_id=390213 | |entrez_id=390213 | ||
| Line 24: | Line 24: | ||
|num_trans=5 | |num_trans=5 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=170145958 |
|start_of_center_position=170145958 | |start_of_center_position=170145958 | ||
| − | |strand= | + | |strand=+ |
|tata_box=49(GCTCTTAAGGCG,+,0.00) | |tata_box=49(GCTCTTAAGGCG,+,0.00) | ||
|transcript_name=ENST00000439373.3 NM_001136107 | |transcript_name=ENST00000439373.3 NM_001136107 | ||
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_233568.1 | |tss_id=hg_233568.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5VVY1 | |uniprot_id=Q5VVY1 | ||
}} | }} | ||
Revision as of 09:03, 14 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 170145958 |
|---|---|
| End of the center position in the TSS region: | 170145959 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000439373.3 NM_001136107 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENST00000439373.3:0 NM_001136107:0 LP895729:42 BC157860:88 BC171858:88 |
TATA-Box annotation
| Distance to TSS: | -4601 |
|---|---|
| Nearest PromoterID: | NR_033791 |
| Entrez ID: | 390213 |
| Nearest Unigene: | Hs.523838 |
| Nearest Refseq: | NR_033791 |
| Nearest Ensembl: | |
| Gene Name: | methyltransferase like 11B |
| Gene Alias: | - |
| Gene Description: | double C2 domain gamma, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.065 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 49(GCTCTTAAGGCG,+,0.00) |
