Difference between revisions of "TSS:Hg 236184.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000394282.8:19 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 NM_001378336:277 NM_001130487:277 NM_001363869:277 NM_001378334:277 NM_001378333:277 NM_001378332:277 NM_001378335:277 ENST00000567667.5:-280 ENST00000565304.5:-282 ENST00000562725.5:-289 NM_020465:-290 NM_001378342:-290 NM_001378338:-290 NM_001378345:-290 NM_001378346:-290 NM_001378339:-290 ENST00000564126.5:-292 ENST00000569539.5:-295 ENST00000569578.5:296 ENST00000421602.6:296 AK126729:296 ENST00000561779.5:299 ENST00000569404.5:-301 ENST00000565430.5:301 ENST00000567063.5:301 ENST00000566041.5:308 ENST00000566061.5:313 AK126574:313 ENST00000258187.9:-340 ENST00000562764.5:-374 CR936733:400 | |all_trans=ENST00000394282.8:19 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 NM_001378336:277 NM_001130487:277 NM_001363869:277 NM_001378334:277 NM_001378333:277 NM_001378332:277 NM_001378335:277 ENST00000567667.5:-280 ENST00000565304.5:-282 ENST00000562725.5:-289 NM_020465:-290 NM_001378342:-290 NM_001378338:-290 NM_001378345:-290 NM_001378346:-290 NM_001378339:-290 ENST00000564126.5:-292 ENST00000569539.5:-295 ENST00000569578.5:296 ENST00000421602.6:296 AK126729:296 ENST00000561779.5:299 ENST00000569404.5:-301 ENST00000565430.5:301 ENST00000567063.5:301 ENST00000566041.5:308 ENST00000566061.5:313 AK126574:313 ENST00000258187.9:-340 ENST00000562764.5:-374 CR936733:400 | ||
| − | |chr= | + | |chr=chr16 |
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=19 | |distance=19 | ||
|distance_to_tss=46590 | |distance_to_tss=46590 | ||
| − | |end= | + | |end=58464005 |
|end_of_center_position=58464005 | |end_of_center_position=58464005 | ||
|entrez_id=101927034 | |entrez_id=101927034 | ||
| Line 24: | Line 24: | ||
|num_trans=36 | |num_trans=36 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=58464004 |
|start_of_center_position=58464004 | |start_of_center_position=58464004 | ||
| − | |strand= | + | |strand=+ |
|transcript_name=ENST00000394282.8 | |transcript_name=ENST00000394282.8 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_236184.1 | |tss_id=hg_236184.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q9ULP0 | |uniprot_id=Q9ULP0 | ||
}} | }} | ||
Revision as of 10:04, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 58464004 |
|---|---|
| End of the center position in the TSS region: | 58464005 |
Gene and protein annotation
|
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Transcript annotation
| Transcript_name: | ENST00000394282.8 |
|---|---|
| Distance: | 19 |
| Num_trans: | 36 |
| All_trans: | ENST00000394282.8:19 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 NM_001378336:277 NM_001130487:277 NM_001363869:277 NM_001378334:277 NM_001378333:277 NM_001378332:277 NM_001378335:277 ENST00000567667.5:-280 ENST00000565304.5:-282 ENST00000562725.5:-289 NM_020465:-290 NM_001378342:-290 NM_001378338:-290 NM_001378345:-290 NM_001378346:-290 NM_001378339:-290 ENST00000564126.5:-292 ENST00000569539.5:-295 ENST00000569578.5:296 ENST00000421602.6:296 AK126729:296 ENST00000561779.5:299 ENST00000569404.5:-301 ENST00000565430.5:301 ENST00000567063.5:301 ENST00000566041.5:308 ENST00000566061.5:313 AK126574:313 ENST00000258187.9:-340 ENST00000562764.5:-374 CR936733:400 |
TATA-Box annotation
| Distance to TSS: | 46590 |
|---|---|
| Nearest PromoterID: | NR_110666 |
| Entrez ID: | 101927034 |
| Nearest Unigene: | Hs.680824 |
| Nearest Refseq: | NR_110665 |
| Nearest Ensembl: | ENSG00000223949 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | - |
| Gene Description: | ROR1 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
