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Difference between revisions of "TSS:Hg 236500.1"

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Line 8: Line 8:
 
|distance=120
 
|distance=120
 
|distance_to_tss=-10
 
|distance_to_tss=-10
|end=17042750
+
|end=30235818
 
|end_of_center_position=30235818
 
|end_of_center_position=30235818
 
|entrez_id=23164
 
|entrez_id=23164
Line 28: Line 28:
 
|p116Rip=
 
|p116Rip=
 
|species=human
 
|species=human
|start=17042749
+
|start=30235817
 
|start_of_center_position=30235817
 
|start_of_center_position=30235817
|strand=+
+
|strand=-
 
|transcript_name=ENST00000394821.2 AK308014
 
|transcript_name=ENST00000394821.2 AK308014
 
|tss_classification=yes
 
|tss_classification=yes

Revision as of 10:11, 14 July 2021

Basic information about the TSS


TSS ID:hg_236500.1
Species:human
Chr:chr17
TSS Classification:yes
Start:30235817
End:30235818
Strand:-
TSS Score:1
Start of the center position in the TSS region:30235817
End of the center position in the TSS region:30235818



Gene and protein annotation


Transcript_name:ENST00000394821.2 AK308014
Distance:120
GeneID:6532
HGNC/MGI_ID:HGNC:11050
UniProt_ID:J3KPR9
Gene_name:solute carrier family 6 member 4
Gene_symbol:SLC6A4
Gene_synonyms:5-HTT SERT1
Gene_source:HGNC:11050



Transcript annotation


Transcript_name:ENST00000394821.2 AK308014
Distance:120
Num_trans:7
All_trans:ENST00000394821.2:120 AK308014:120 ENST00000650711.1:121 NM_001045:121 AK313166:121 ENST00000261707.7:-150 ENST00000401766.6:-184



TATA-Box annotation


Distance to TSS:-10
Nearest PromoterID:NM_015134
Entrez ID:23164
Nearest Unigene:Hs.462341
Nearest Refseq:NM_015134
Nearest Ensembl:ENSG00000133030
Gene Name:solute carrier family 6 member 4
Gene Alias:M-RIP|MRIP|RHOIP3|RIP3|p116Rip
Gene Description:myosin phosphatase Rho interacting protein
Gene Type:protein-coding
CpG%:0.2
GC%:0.850746
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):